1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCGACCTGAATGCACACACTGTCTTTGCGATCACAACGGCCTTGGCAATTCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaaatgtagtagaatccttacaacattgtttcttttttttcctgatctttcaaaggaatgtaggactattttagtcagccagaacaatctttc...
species | Zea mays |
transcript | GRMZM2G125889_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTG CTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTGEST: gi|71758749|gb|DR956686.1|DR956686
genomic: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaa ... ttgtactcagCTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
EST: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTG CTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTGEST: gi|76285743|gb|DV025311.1|DV025311
genomic: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaa ... ttgtactcagCTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
EST: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTG CTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTGEST: gi|110194811|gb|EC876709.1|EC876709
genomic: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaa ... ttgtactcagCTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
EST: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTG CTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTGEST: gi|60353518|gb|DN220491.1|DN220491
genomic: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaa ... ttgtactcagCTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
EST: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTG CTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
genomic: TCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaa ... ttgtactcagCTGACGGTGTGATGGCGACAATTGCAGTCATCCTCTGCCTGTTCTGGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGACCTGAATGCACACACTGTCTTTGCGATCACAACGGCCTTGGCAATTCTCCAAACAGTCTGTCTCAGGAACCTCAGTCTCCTCTCGTATCTTTCTGgtatgctaaaatgtagtagaatccttacaacattgtttcttttttttcctgatctttcaaaggaatgtaggactattttagtcagccagaacaatctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaacaa