1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACATGTGCCAATGTGGCGTGGGGCCAAAGTAGCGTATCTCCTGATTGCAATGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtacttcatgatgcttgcttagctcatcggtctgaccatgacttaattatgatgcacctaacgatccctggacccttgtgctcatactcttgccataccctgcag
species | Zea mays |
transcript | GRMZM2G125832_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|149001881|gb|EE038833.2|EE038833
genomic: CTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|74233730|gb|DT641644.1|DT641644
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|110939871|gb|EE160028.1|EE160028
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|93281688|gb|EB673952.1|EB673952
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|86473516|gb|DY239886.1|DY239886
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|101386685|gb|EB815359.1|EB815359
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|78073682|gb|DV502116.1|DV502116
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|88752774|gb|DY536915.1|DY536915
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: AGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGAGGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|148980664|gb|EE027282.2|EE027282
genomic: AGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|71426294|gb|DR807344.1|DR807344
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGACEST: gi|71426897|gb|DR807947.1|DR807947
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
EST: TGTGCCTCTTCCCCGTTGCAGTTAGAGGCTACTGGGCCTACGGAAACATG GTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
genomic: TGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtactt ... taccctgcagGTGCCACCAGGAGGGATGCTGGCGGCACTCTACGCCTTCCACAGCCATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGTGCCAATGTGGCGTGGGGCCAAAGTAGCGTATCTCCTGATTGCAATGTGCCTCTTCCCCGTTGCAGTTGGAGGCTACTGGGCCTACGGAAACATGgcaagtacttcatgatgcttgcttagctcatcggtctgaccatgacttaattatgatgcacctaacgatccctggacccttgtgctcatactcttgccataccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG