Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagacacatgcca...

Basic information

species Zea mays
transcript GRMZM2G124455_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g25850.2 (Oryza sativa), 5'ss of exon 4
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagacacatgcca
||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||      ||| || |  ||| |   | |||| |        |  | |  | |  ||||   |||                                     
TGGCTAGCTTTGGATAAAGAGgcaaagaagctttcagtggaaacaactgctaaccaggtgaaag------ttcttaactctttgtagattatattatttgcgcataataacaggatgtcct-atacca------------------------------------

upper sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 4
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagacacatgcca
||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||      ||| || |  ||| |   | |||| |        |  | |  | |  ||||   |||  |  |||   |    ||    |||||    || |  
TGGCTAGCTTTGGATAAAGAGGCAAAGAAGCTTTCAGTGGAAACAACTGCTAACCAGgtgaaag------ttcttaactctttgtagattatattatttgcgcataataacaggatgtcct-ataccatgcagtctactcttgaacaacaacagttcaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12969984|gb|BG266756.1|BG266756
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71330409|gb|DR801958.1|DR801958
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149102601|gb|EE188241.2|EE188241
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTTATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71439541|gb|DR820591.1|DR820591
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71768769|gb|DR966706.1|DR966706
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAAGTGCAAGCTTGGTTCCCGCTGT-GGGGATTGA
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCC-GCTGTTGGGGATTGA
EST: gi|60351803|gb|DN218776.1|DN218776
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149107702|gb|EE189578.2|EE189578
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29545016|gb|CB605194.1|CB605194
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|74244470|gb|DT652384.1|DT652384
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|40337235|gb|CK371305.1|CK371305
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71768768|gb|DR966705.1|DR966705
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67011046|gb|CO439795.1|CO439795
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71298564|gb|DR785257.1|DR785257
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148933163|gb|EC876803.2|EC876803
EST:     TAAAGAGGCAAAAAAGCTTTCCGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGGTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|74233583|gb|DT641497.1|DT641497
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67018883|gb|CO447632.1|CO447632
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71426926|gb|DR807976.1|DR807976
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71437068|gb|DR818118.1|DR818118
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|91056846|gb|EB167264.1|EB167264
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149021338|gb|EE045792.2|EE045792
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|9733426|gb|BE512283.1|BE512283
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|211255956|gb|FL470284.1|FL470284
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29543885|gb|CB604265.1|CB604265
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71440078|gb|DR821128.1|DR821128
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50336630|gb|CO531756.1|CO531756
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50329149|gb|CO524275.1|CO524275
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|101389793|gb|EB816827.1|EB816827
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71298562|gb|DR785256.1|DR785256
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|26557504|gb|CA829739.1|CA829739
EST:     AAAGAGGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: AAAGAGG-CAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50336612|gb|CO531738.1|CO531738
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|37395751|gb|CF635158.1|CF635158
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50331196|gb|CO526322.1|CO526322
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29543442|gb|CB603838.1|CB603838
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|60351636|gb|DN218609.1|DN218609
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71447967|gb|DR829017.1|DR829017
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGTTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29544083|gb|CB604463.1|CB604463
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|40336945|gb|CK371015.1|CK371015
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148972354|gb|EE023268.2|EE023268
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71330410|gb|DR801959.1|DR801959
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|4776003|gb|AI665006.1|AI665006
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149095146|gb|EE180760.2|EE180760
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|211255955|gb|FL470283.1|FL470283
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|110194904|gb|EC876802.1|EC876802
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148993134|gb|EE033733.2|EE033733
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|110934226|gb|EE154452.1|EE154452
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148948500|gb|EC894019.2|EC894019
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76014752|gb|DT941922.1|DT941922
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|101400004|gb|EB821849.1|EB821849
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71439547|gb|DR820597.1|DR820597
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71440079|gb|DR821129.1|DR821129
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148931241|gb|EC874027.2|EC874027
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|60358457|gb|DN225430.1|DN225430
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29544216|gb|CB604596.1|CB604596
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|78027681|gb|DV496068.1|DV496068
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149040136|gb|EE046787.2|EE046787
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|31997580|gb|CD661666.1|CD661666
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76292533|gb|DV032101.1|DV032101
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|6653893|gb|AW267298.1|AW267298
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76292534|gb|DV032102.1|DV032102
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149107703|gb|EE189579.2|EE189579
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|91056845|gb|EB167263.1|EB167263
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71426927|gb|DR807977.1|DR807977
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGG--A---                         --TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149040135|gb|EE046786.2|EE046786
EST:     TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 38 (upstream exon), 49 (downstream exon)
Score: 60

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG


Block sizes: 37 (upstream exon), 49 (downstream exon)
Score: 54

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattca ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAGgtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagacacatgcca

- - - - - - - - AAGAGG