Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagaca...

Basic information

species Zea mays
transcript GRMZM2G124455_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124455_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g25850.2 (Oryza sativa), 5'ss of exon 4
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagaca
||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||      ||| || |  ||| |   | |||| |        |  | |  | |  ||||   |||                              
TGGCTAGCTTTGGATAAAGAGgcaaagaagctttcagtggaaacaactgctaaccaggtgaaag------ttcttaactctttgtagattatattatttgcgcataataacaggatgtcct-atacca-----------------------------

upper sequence: GRMZM2G124455_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 4
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagaca-------
||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||      ||| || |  ||| |   | |||| |        |  | |  | |  ||||   |||  |  |||   |    ||    |||||          
TGGCTAGCTTTGGATAAAGAGGCAAAGAAGCTTTCAGTGGAAACAACTGCTAACCAGgtgaaag------ttcttaactctttgtagattatattatttgcgcataataacaggatgtcct-ataccatgcagtctactcttgaacaacaacagttcaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149008748|gb|EE040945.2|EE040945
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|60351803|gb|DN218776.1|DN218776
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|40337235|gb|CK371305.1|CK371305
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148948500|gb|EC894019.2|EC894019
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|31997580|gb|CD661666.1|CD661666
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50329149|gb|CO524275.1|CO524275
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|28576119|gb|CB282011.1|CB282011
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76292534|gb|DV032102.1|DV032102
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GTGAAAGGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGG
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagG--A-----TCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGG
EST: gi|71439541|gb|DR820591.1|DR820591
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148933163|gb|EC876803.2|EC876803
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCCGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGGTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|60358457|gb|DN225430.1|DN225430
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71439547|gb|DR820597.1|DR820597
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67010892|gb|CO439641.1|CO439641
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148972354|gb|EE023268.2|EE023268
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67013650|gb|CO442399.1|CO442399
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71440079|gb|DR821129.1|DR821129
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|110194904|gb|EC876802.1|EC876802
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29131037|gb|CB381741.1|CB381741
EST:     TTTGGATAAAGAGGCAAAAAAGCTTTCACGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCCCTGTTGGGGATTGAT
genomic: TTTGGATAAAGAGGCAAAAAAGCTTTCA-GTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|101389793|gb|EB816827.1|EB816827
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29544566|gb|CB604946.1|CB604946
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAG
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAG
EST: gi|149040135|gb|EE046786.2|EE046786
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71298564|gb|DR785257.1|DR785257
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149107703|gb|EE189579.2|EE189579
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71330409|gb|DR801958.1|DR801958
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|26557504|gb|CA829739.1|CA829739
EST:     TTTGGATAAAGAGGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: TTTGGATAAAGAGG-CAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149107702|gb|EE189578.2|EE189578
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29543442|gb|CB603838.1|CB603838
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71768769|gb|DR966706.1|DR966706
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAAGTGCAAGCTTGGTTCCCGCTGT-GGGGATTGA
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCC-GCTGTTGGGGATTGA
EST: gi|149021338|gb|EE045792.2|EE045792
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71426927|gb|DR807977.1|DR807977
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149095146|gb|EE180760.2|EE180760
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|211100828|gb|FL431020.1|FL431020
EST:     CTCTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|74244470|gb|DT652384.1|DT652384
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50336612|gb|CO531738.1|CO531738
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50329148|gb|CO524274.1|CO524274
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76014752|gb|DT941922.1|DT941922
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|26557457|gb|CA829692.1|CA829692
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|12969984|gb|BG266756.1|BG266756
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|60351636|gb|DN218609.1|DN218609
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|6653893|gb|AW267298.1|AW267298
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50331196|gb|CO526322.1|CO526322
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71437068|gb|DR818118.1|DR818118
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|4776003|gb|AI665006.1|AI665006
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71447967|gb|DR829017.1|DR829017
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGTTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67011046|gb|CO439795.1|CO439795
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|40336945|gb|CK371015.1|CK371015
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71426926|gb|DR807976.1|DR807976
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|91056846|gb|EB167264.1|EB167264
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71440078|gb|DR821128.1|DR821128
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|91056845|gb|EB167263.1|EB167263
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29544083|gb|CB604463.1|CB604463
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29543885|gb|CB604265.1|CB604265
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|211255955|gb|FL470283.1|FL470283
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67018883|gb|CO447632.1|CO447632
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149102601|gb|EE188241.2|EE188241
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTTATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|50336630|gb|CO531756.1|CO531756
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71298562|gb|DR785256.1|DR785256
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|110934226|gb|EE154452.1|EE154452
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTTTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|37395751|gb|CF635158.1|CF635158
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|113674665|gb|DW828974.1|DW828974
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACAACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|74233583|gb|DT641497.1|DT641497
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71768768|gb|DR966705.1|DR966705
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|101400004|gb|EB821849.1|EB821849
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|71330410|gb|DR801959.1|DR801959
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|211255956|gb|FL470284.1|FL470284
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|149040136|gb|EE046787.2|EE046787
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|166586857|gb|EG083304.1|EG083304
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTAGA
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATT-GA
EST: gi|29544216|gb|CB604596.1|CB604596
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|5081114|gb|AI738160.1|AI738160
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGATGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148993134|gb|EE033733.2|EE033733
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|76292533|gb|DV032101.1|DV032101
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGGTGAAAG                   
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATC-------AGgtgaaaggtg ... tttc
EST: gi|9733426|gb|BE512283.1|BE512283
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|78027681|gb|DV496068.1|DV496068
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|67010751|gb|CO439500.1|CO439500
EST:     TNTGGATAAAAGAGGCAAAAA-GCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCCAGCTTGGGTCCGCTGTTGGGGGTTGAT
genomic: TTTGGATAAA-GAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|148931241|gb|EC874027.2|EC874027
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
EST: gi|29545016|gb|CB605194.1|CB605194
EST:     CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAG                         GATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT
genomic: CTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 602

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 498

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 446

TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtg ... tttcttgcagGATCCTCTGGTGACTAAAGGTGCAAGCTTGGTTCCGCTGTTGGGGATTGATGTCTGGGAGCATGCGTACTACCTGCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTAGCTTTGGATAAAGAGGCAAAAAAGCTTTCAGTTGAAACTACAGCTAATCAGgtgaaaggtgttattcatatcagtttattcttcatatgacagagttgtgtttatggaacttccttgcacctagttgtcccataggcaagcctaacagaca

- - - - - - - - AAGAGG