1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTCGGGTCTGATGCTGCAGCTTATGCTAAGGAAGTCGAAGAACACATAACTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactttgaacagaccatttataaaatgctagaactaattgaaataatatgtatcttttgtttataaacccaattcaaaataacttatccttgtcgcaatcttgttgatacaccatctctgctgtag
species | Zea mays |
transcript | GRMZM2G124353_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAG GGTGTGGGAGGGGCTGTTGAACTAGCTCCTGGATACCTANAGTTAGCTTATEST: gi|149042716|gb|EE047231.2|EE047231
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCCA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|211311887|gb|FK975958.1|FK975958
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|148965746|gb|EE016621.2|EE016621
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|30031577|gb|CB833428.1|CB833428
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|6626596|gb|AW258128.1|AW258128
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|44682053|gb|CK787101.1|CK787101
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|94472312|gb|EB701270.1|EB701270
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATEST: gi|13558145|gb|BG549501.1|BG549501
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGT-GCAGGCTTCATTGCAGAAACATTCCAA GGTGTGGGAGGTGCTGT-GAACTAGCTCCTGGATACCTAAAGT-AGCT-ATEST: gi|148955020|gb|EC900523.2|EC900523
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
EST: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCGA GGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
genomic: CTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactt ... tctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGGGTCTGATGCTGCAGCTTATGCTAAGGAAGTCGAAGAACACATAACTTATGGAAGTTCAGGAAGGGTTGCAGGCTTCATTGCAGAAACATTCCAAgtataaactttgaacagaccatttataaaatgctagaactaattgaaataatatgtatcttttgtttataaacccaattcaaaataacttatccttgtcgcaatcttgttgatacaccatctctgctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG