Sequence
atgc intronic sequence ATGC exonic sequenceGAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttttatctgaaattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G13950.1 (Glycine max), 5'ss of exon 3
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttttatctgaaattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag
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GAATTGGTTATAATGGGTTTCCAAGAGGTTGTTCTGATGACAAGCTACCCTGGGCACAGgttggtatttaagagaacaagtttt----ttgttttttggagtatttattaaacactctc-attca--------------gaaatctcttcgtgtttcag
upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G03380.1 (Glycine max), 5'ss of exon 4
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttttatctgaaattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag
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GAATTGGTTATAATGGATTTCCAAGAGGTTGTTCTGATGACAAGCTACCCTGGGCAAAGgt-------tggtatttaagagaatgactttttctttt----ctttttgga----gtattcattaaacattctcattcagaaa-tctcttcgtgtttcag
upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 4
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 4
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttttatctgaaattctgaagttctat--------tttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag-----------
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GGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGGGCCAAGgta--ttaccttcatctgaa-ttctaagaatatacagaagttgtctagagataatgcaaggaactttctcccctagatttattaattttctcttaatttgctccccaccaattttgcag
upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g01370.t01 (Vitis vinifera), 5'ss of exon 4
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcctttt-atctga-aattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag
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GCATTGGCTATAATGGGTTCCCAAGAGGCTGTTCAGATGACAAGCTCCCTTGGGCAAAGgttggtagttaaagatctaataagttcctaatattatgaaggagtgactagtagtaatcctgtgctcgtatatttcag------------------------
upper sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 4
lower sequence: EFJ05614 (Selaginella moellendorffii), 5'ss of exon 2
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttt---tatctgaaattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag
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GCATTGGCTACAACGGCTTTCCTCGAGGTTGCTCCGACGATAAGCTTCCCTGGGCCAAAgtaagctccattccatgtattttactctcgagattcacttggaccctctttgcag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76912349|gb|DV164688.1|DV164688EST: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAG AAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
genomic: ACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttcct ... tctatttcagAAATCTGCAAGTGGAGATCCATTGGAGACAAAATTCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTGGCTACAATGGCTTCCCTAGAGGTTGTTCCGATGACAAGCTTCCTTGGGCAAAGgtatgttccttttatctgaaattctgaagttctattttggaactattagtagctggtgtccactcaataacaagagaaagaaggttacttaataatctag
- - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG