Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGCTTCTGTATTTCCCATGTGGATTGATAAGAGGTGCCTTGACTAACTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgagctatgcttttttctgatctttttaacatgtggttaattttcatcgtttggtgatctgttgcacatcttatatcaaccactagagtcaaac...

Basic information

species Zea mays
transcript GRMZM2G123807_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123807_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g06970.3 (Oryza sativa), 5'ss of exon 2
ACCATGCTTCTGTATTTCCCATGTGGATTGATAAGAGGTGCCTTGACTAACTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgagctatgcttttttctgatcttt--ttaacatgtggttaattttcatcgtttggtgatctg--ttgcacatcttatatcaaccactagagtcaaac
| |||||||||||| || ||||| ||  | ||||||||||||||||| || || || ||| ||||||||||| |||| |||||||| ||||||||||||||| |||||  |||  | ||||  ||| ||||  ||  ||||    |   |    | |     ||  |||  | | ||  ||| | |   |   || | | |   
AGCATGCTTCTGTACTTTCCATGCGGGATAATAAGAGGTGCCTTGACCAATTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgcactactccttttcatgacctttactttgcatgcaactccatgaggttgcaaaatgcactggatggtactccttctgttttca--tataattat--

upper sequence: GRMZM2G123807_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g19060.1 (Oryza sativa), 5'ss of exon 3
ACCATGCTTCTGTATTTCCCATGTGGATTGATAAGAGGTGCCTTGACTAACTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgagctatgcttttttctgatctttttaacatgtggttaattttcatcgtttggtgatctgttgcacatcttatat----caaccactagagtcaaac-----
| |||||||||||| || ||||| ||  | ||||||||||||||||| || || || ||| | ||||||||| |||| |||||||| ||||||||||||||| |||||  | |       |||| || | ||| ||||    |  |    || | |  ||     |  |||||    || ||    || ||  |    |||||      
AGCATGCTTCTGTACTTTCCATGCGGGATAATAAGAGGTGCCTTGACCAATTTGGGGATTTCTTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgcaccac------ttctcatgtcttttacataccatgcaa---caccatgaggctgcataatgcactcactagatggtacaccctttgttttcaaataacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109854|gb|DV528270.1|DV528270
EST:     CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAGGTA
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
EST: gi|166523833|gb|EG256143.1|EG256143
EST:     CCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
genomic: CCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
EST: gi|211101164|gb|FL105400.1|FL105400
EST:     CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
EST: gi|76019259|gb|DT946429.1|DT946429
EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCCAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAA
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAA
EST: gi|113681377|gb|DW840071.1|DW840071
EST:     GTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAAGACATGAACTGTGAGAAACGATACAAGT
genomic: GTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAA-GACATGAACTGTGAGAAACGATACAAGT
EST: gi|32925360|gb|CF030172.1|CF030172
EST:     CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGT
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGT