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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATAATCTCACAATCGTATGCTATCATTCGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttcttgcctatgatatgttatgttgcttctgtgaagtgctgctttcgtagcttcttagcttgtgttgtgccttgtaatggaattacttgccttcactgatctgttttgtatttttatgtgtag

Basic information

species Zea mays
transcript GRMZM2G123732_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123732_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g54920.1 (Oryza sativa), 5'ss of exon 5
GTTATATAATCTCACAATCGTATGCTATCATTCGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttcttgccta-tgatatgttatgttgcttctgtgaag---tgctgctttcgtagcttct--tagcttgtgttgtgccttgtaatggaattacttgccttcactg---atctgttttgtatttttatgtgtag
||| || |||||||| |  ||||| |||||||| ||||||||||| || || |||||||||||| |||| ||||||||||||||||     |  ||  || | | | |  ||  | ||  |  |   |  || | | |||  ||    ||   |  ||     |||||  |   ||  |||  |||||      ||   |  |  || | |  ||||||
GTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGgtactagggtatcttctgttctatcaacttattactacgctgctttcttgatcttgtacattgggatattctacgtaccctcttgttcttatatagcttttcttcatcaaaaattgctggttcatgtctgagtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933373|gb|CF038185.1|CF038185
EST:     CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
genomic: CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttctt ... ttatgtgtagGAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
EST: gi|211324995|gb|FL127007.1|FL127007
EST:     GACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
genomic: GACTTTTTCCAGgtaccttctt ... ttatgtgtagGAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
EST: gi|211474975|gb|FL438616.1|FL438616
EST:     CGCTTTACCTTCCCCTCCCATATGTGACTTTCTTAGCGGACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
genomic: CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttctt ... ttatgtgtagGAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
EST: gi|33092349|gb|CF052343.1|CF052343
EST:     CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
genomic: CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttctt ... ttatgtgtagGAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
EST: gi|32934905|gb|CF039717.1|CF039717
EST:     CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT
genomic: CGCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCGGACTTTTTCCAGgtaccttctt ... ttatgtgtagGAGGAAGACATGCTCCTAGAGAGCGTTTACTATTCTGAAATGAAGGATGCT