Sequence
atgc intronic sequence ATGC exonic sequenceAGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaagttatagctcaaatgtttagagaaattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G121942_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g34480.1 (Oryza sativa), 5'ss of exon 4
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaagttatagctcaaatgtttagagaaattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
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GGATAGCTATGCATCCTATATTGGGCACTATCCAATGCTGGCATATTTTTCCATTGCTGAGAATGAATCAATTGGAAGAGAGCGTTACAATTTTATGCAGgtatg--ttaaaagcttattataacatgtcttctgtacggtagttgaaaattatgt-tggacttatc-tggtttattaatattgatgtagaactgctcctaaaa---------------------------------------
upper sequence: GRMZM2G121942_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT4G14342.1 (Arabidopsis thaliana), 5'ss of exon 3
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaagt-tatagctcaaatgtttagagaaattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
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TGATAGTTATGCTTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCTATTGCTGAGAACGAGTCTATTGGACGAGAACGCTACAATTTCATGCAGgt-ttgcctcctttcatgtcttttgcatattactt---tctctagtgacaaatctacagttcaagatttggatta---------tgatt----ctatgtttatt--tgattaggtgcgt-------------------------
upper sequence: GRMZM2G121942_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G23325.1 (Arabidopsis thaliana), 5'ss of exon 3
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaa-gttatagctcaaatgtttagaga-aattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
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TGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAGCTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGgtttgtttactatctttcttcttgcatcatgtcaaggaatcatattgagaatgttaatgtgttagtgtcttaagggagaggaac--aattagggttgt-ttca------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37387079|gb|CF630732.1|CF630732EST: CCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAG GGCCTGGGCATCAAATAAAGCCTTGCACACCTCTAGGTGGTATGCGTAGGC
genomic: CCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctc ... tcttgtttagGGCCTGGGCATCAAATAAAGCCTTGCACACCTCTAGGTGGTATGCGTAGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACAGTTATGCCTCTTATATTGGGCACTATCCAATGCTAGCATATTTTGCCATTGCTGAGAACGAATCGATCGGAAGAGAACGTTACAATTTCATGCAGgtattgcctccactcttcttctaagttatagctcaaatgtttagagaaattctagcgcataaatatcatggttaaaaaaaacctaattagacttatgtttactcacgattgaacctgaaatggacccctagtgtcttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA