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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGCTGCATTTTATGTGGCACAGGCGTTGGAATACTGCAGTAGCAAAGGGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtctttacttgttcgcgttagttgcttttctgagttttgatacaaagcattaacctttttgtgttttgattgtgggccaattttatag

Basic information

species Zea mays
transcript GRMZM2G121826_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121826_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g61010.1 (Oryza sativa), 5'ss of exon 4
GAGGGCTGCATTTTATGTGGCACAGGCGTTGGAATACTGCAGTAGCAAAGGGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtctttacttgttcgcgttagttgcttttctgagttttgatacaaagcattaacctttttgtgttttgattgtgggccaattttatag
  | |||||||| |||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||||||  |||| |||| |||| |||  ||| ||| |   |||||  ||| | |   ||  | | | |   || |  | | |  |||||||||  |    ||         
ACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGgtgagtcagtacctgtgctacttagtaacttct-tagcttgggcttccagtaataaggcatgtaatgttttgatgataaatcatag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103589|gb|EE288989.2|EE288989
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         G----TAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|71772711|gb|DR970638.1|DR970638
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|71302365|gb|DR787300.1|DR787300
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|67034938|gb|CO463471.1|CO463471
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|149012049|gb|EE042465.2|EE042465
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|9952364|gb|BE638947.1|BE638947
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|9952536|gb|BE639119.1|BE639119
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|71299876|gb|DR785964.1|DR785964
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTG
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTG
EST: gi|148982427|gb|EE028311.2|EE028311
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|149036971|gb|EE155209.2|EE155209
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCCAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
EST: gi|148945740|gb|EC891020.2|EC891020
EST:     GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCG                         GAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT
genomic: GGAGGGCACTCTATCATGACCTGCATGCATACAGGGTCGTCTTCGATGCGgtgggtcttt ... aattttatagGAAGGTAACCCAAGACTATCATGTTTTGGTCTGATGAAGAACAGCCGTGAT