Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggcatcttttactcctggctatttgattgtttgattttatcttaatggagatgtttatgtgcttttctgcttcacag

Basic information

species Zea mays
transcript GRMZM2G121452_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g25420.2 (Oryza sativa), 5'ss of exon 4
CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggcatcttttactc-----ctgg------ctatttgattgtttgattttatcttaatggag---atg----tttatgtgcttttctgcttcacag------
| || ||||||||||| |||||||||||||| |||||||| ||||||||||| || || || || || |||||||| || ||||| ||||||||||| |||| |||     | | |||||      ||||        |||||||   ||||||| |  ||  || ||   ||      |||| ||  |   || |   ||       
CATTTATGGAGGGTGCTTACAACCGAGTGTTGAGCGCTCGCCAGGCTGTGCCCCACGAAACATATGTGTACTTCATGGATCTTCTTGCCAAAACAGTCAGgtcagtataattatattactgtattactggtgcttctcatttgatgtattgatttaaaatttgtgcagcccataatcccttatttgaatgcttgttctgcacatgcag

upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S68_29V6.1 (Physcomitrella patens), 5'ss of exon 5
CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggcatcttttactcctggct-atttgattgtttgattttatcttaatggagatgttt---atgtgctttt-ctgcttcacag-----------------------------------------------
| ||||||||||| ||||||||||| ||  |||| || || || ||||| |||||||| || || || ||||| || |||||||| ||||| || || ||||  |    || |    | |  ||  | | ||  | | | ||||   |   ||  | | | ||       |||| || ||| | || ||                                               
CGTTCATGGAGGGCGCCTACAACCGTGTTCTAAGTGCCCGTCAAGCTGTTCCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatg-atacaccaaggaattatgaatgactttctcggtggattgactagaaactgcgtttttgcaaggatgctcttactgttgcaaagatcatggtaatgatgtactcaataattactcatttcattgtgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118214|gb|DV536601.1|DV536601
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|50322448|gb|CO517574.1|CO517574
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|31350060|gb|CD434417.1|CD434417
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|71314411|gb|DR793830.1|DR793830
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|76925420|gb|DV170446.1|DV170446
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAATAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|32858209|gb|CD997890.1|CD997890
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|60346094|gb|DN213067.1|DN213067
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|33101497|gb|CF061457.1|CF061457
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211374254|gb|FL175470.1|FL175470
EST:     CACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAA-CAGT-ANG                         AGATGATATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTG
genomic: CACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTA-Ggtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTG
EST: gi|71421223|gb|DR805346.1|DR805346
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTA
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTA
EST: gi|76290008|gb|DV029576.1|DV029576
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAANAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|91877590|gb|EB407547.1|EB407547
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|50322447|gb|CO517573.1|CO517573
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|71447603|gb|DR828653.1|DR828653
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAANAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211371593|gb|FL175458.1|FL175458
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAA                         AGATGAAATCGCTGGG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGG
EST: gi|32824580|gb|CD964302.1|CD964302
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|74245478|gb|DT653392.1|DT653392
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAANAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|74246334|gb|DT654248.1|DT654248
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|76285525|gb|DV025093.1|DV025093
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|32910062|gb|CF014874.1|CF014874
EST:     AGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: AGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211410327|gb|FL477489.1|FL477489
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211374250|gb|FL175466.1|FL175466
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|33094418|gb|CF054412.1|CF054412
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|71421222|gb|DR805345.1|DR805345
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211371597|gb|FL175462.1|FL175462
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAN                         AGATGANATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|78123250|gb|DV541634.1|DV541634
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|32907102|gb|CF011915.1|CF011915
EST:     GACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: GACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|76290007|gb|DV029575.1|DV029575
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211374251|gb|FL175467.1|FL175467
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|50323893|gb|CO519019.1|CO519019
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211371596|gb|FL175461.1|FL175461
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|71444673|gb|DR825723.1|DR825723
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|31351657|gb|CD436014.1|CD436014
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|91049533|gb|EB159951.1|EB159951
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|76015137|gb|DT942307.1|DT942307
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|88751295|gb|DY535436.1|DY535436
EST:     CCACATGAGACCTATGTTTACTTCATCGATCTTCTCGCCAAAACAGTTAG                         AGATGATATCGCTGGGTGCAGCGAAAAGGTGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|93282632|gb|EB674896.1|EB674896
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|211394133|gb|FL452938.1|FL452938
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|76014276|gb|DT941446.1|DT941446
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|31352805|gb|CD437162.1|CD437162
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
EST: gi|31355614|gb|CD439971.1|CD439971
EST:     CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAG                         AGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG
genomic: CCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 37 (upstream exon), 49 (downstream exon)
Score: 159

CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAGTGATGCAAAGCAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAG


Block sizes: 27 (upstream exon), 49 (downstream exon)
Score: 194

CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAGTGATGCAAAGCAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 177

CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAGTGATGCAAAGCAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAG


Block sizes: 27 (upstream exon), 49 (downstream exon)
Score: 84

CCTTCATGGAGGGTGCCTACAACCGAGTGTTAAGCGCTCGGCAGGCTGTGCCACATGAGACCTACGTTTACTTCATCGACCTTCTCGCCAAAACAGTTAGgtgagtgggc ... tgcttcacagAGATGAGATCGCTGGGTGCAGCGAAAAGGGGTATGATTCTCTATCTGTGAGTGATGCAAAGCAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAG