Sequence
atgc intronic sequence ATGC exonic sequenceGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattcaatggttgtttccaactatcgatacttgttgaatcctgatcatgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 4
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattca-----atggttgtttccaac--------tatcgatacttgttg-aatcctgatcat-gtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacg-tatgcttgttaagaaactgtgtcattttattattgcag
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GCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAAgtaaggcatagatctatctacgtattcttttgtaacagggtactttttgacagctactgcagatatgttgattatggatatgttctgtgttttctagttttacta-aaacaacttgttctaaaaataacttgcatgtgaacaaactacattattctcttcttgcag
upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 4
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaag-attacaattcaatggttgtttccaactatcgatacttgttgaatcctgatcatgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
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GCAAATGTTTATCATGCAACTAAATCTGATACTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTCTGGTATTTAAgtaagtacaacagct--gtagcttgtttcagct-tcttctgttgctatagattgtattggaggctgaaatgtttaga----aagaattatataggcagtcataaatt--------------------------------------------
upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 4
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattcaatggttgtttccaactatcgatacttgttgaatcctgatcatgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
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GCAAATGTTTATCATGCAACTAAATCTGATGGTCAAGAACTTGCAATTAAAGTATACAAAACATCTGTTTTGGTATTCAAgtaagtacaacagctgtagcttgtttcagcctctt-----ctgttgc-tctaaattgtattgaaggctgaagtgtttagaaagaattatataggcagccataaatt--------------------------------------------
upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 4
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattcaatggttgtttc-caactatcgatact-tgttgaatcctgatc--atgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
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GCAAATGTTTATCATGCCACAAAATCCGATGGTCACGAACTTGCAATTAAAGTGTACAAAACTTCTGTTCTAGTATTTAAgtaagtt--ctatgcaccttttaactggctgtgatggaaattatagtgtatacggagtgaatataagacagtcataaaaataccaatgcatccgtgtatttt----------------------------------------------------
upper sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S191_78V6.1 (Physcomitrella patens), 5'ss of exon 5
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattcaatggtt---gtttccaactatcgatacttgttgaatcctgatcatgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
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GCCAATGTTTATCATGCAACCACCTCCTCAGGAGAGGAACTAGCTGTGAAAGTCTACAAAACCTCTATCCTTGTTTTTAAgtaagctttctttgctaaattttccgtctttattttccaattttcagtatttcccgct-----gttcttatcatttagcc---aatgctggtgttgaaggcttaggat---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78115075|gb|DV533463.1|DV533463EST: GGCCAGGAGCTTGCAATTAA-GTCTACAAAACCTCTGTCCTTGTTTTTAA NGATAGAGACCGATATGTCC
genomic: GGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattac ... attattgcagGGATAGAGACCGATATGTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattcaatggttgtttccaactatcgatacttgttgaatcctgatcatgtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacgtatgcttgttaagaaactgtgtcattttattattgcag
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - GAGCTT