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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGAATACCTGGCATTGACATCACGCTTAAGGAGGGTGACACATGGATGTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatggaaaatttcttatgactcatcttatattcgttcttgccttcaaagttaactcctgcactgcacatgaaggcttttcgttaacttttcatgtatttttattag

Basic information

species Zea mays
transcript GRMZM2G120300_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120300_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g34100.1 (Oryza sativa), 5'ss of exon 4
GACAGAATACCTGGCATTGACATCACGCTTAAGGAGGGTGACACATGGATGTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatggaaaatttcttat--gactcatcttatattcgttcttgccttcaaagttaactcctgcactgcacatgaaggcttttcgttaacttttcatgtatttttattag
|| ||||| || ||||||||||| || ||||  |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| ||||||  || | | || ||||||||  || | ||||| | |   ||  | | ||      | |  ||    ||| |  || | |        ||  ||| | |  |          
GATAGAATTCCAGGCATTGACATAACTCTTAGTGAGGGTGACACATGGATGTTTGCTGGTCATCAAGTTCTTGTAATGGAAACTCCTGGTCATACATCAGgtgcgtgcttgcaagtttcttattagatttatcttctttctttttcttcattatcgaattatgccaagtctgaatgtgtatgt-----actagatttccttaaac---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5325053|gb|AI783244.1|AI783244
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|76286960|gb|DV026528.1|DV026528
EST:     TGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: TGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|111991062|gb|EE331971.1|EE331971
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|32925422|gb|CF030234.1|CF030234
EST:     TACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: TACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|149112938|gb|EE295731.2|EE295731
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTA
EST: gi|32831167|gb|CD970845.1|CD970845
EST:     ACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: ACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|32926516|gb|CF031328.1|CF031328
EST:     TACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: TACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|32925540|gb|CF030352.1|CF030352
EST:     ACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: ACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|78113025|gb|DV531419.1|DV531419
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|148939665|gb|EC884322.2|EC884322
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|148957405|gb|EC903461.2|EC903461
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|32831772|gb|CD971450.1|CD971450
EST:     ACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: ACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|149075909|gb|EE164468.2|EE164468
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|5846865|gb|AI999948.1|AI999948
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|60400379|gb|DN233186.1|DN233186
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCT-GTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|76286961|gb|DV026529.1|DV026529
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGNAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|89758697|gb|DY687784.1|DY687784
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|76912679|gb|DV164844.1|DV164844
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACTACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|78113024|gb|DV531418.1|DV531418
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|32926815|gb|CF031627.1|CF031627
EST:     TACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGATA
genomic: TACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|93282109|gb|EB674373.1|EB674373
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|149112937|gb|EE295730.2|EE295730
EST:     GTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|211480476|gb|FL101272.1|FL101272
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGACATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|6445407|gb|AW179475.1|AW179475
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGTACATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|149103112|gb|EE288479.2|EE288479
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTA
EST: gi|148947425|gb|EC892845.2|EC892845
EST:     AACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: AACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|60352578|gb|DN219551.1|DN219551
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|149026716|gb|EE046118.2|EE046118
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|91048227|gb|EB158645.1|EB158645
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
EST: gi|67017612|gb|CO446361.1|CO446361
EST:     GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAG                         GTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA
genomic: GTTCGCTGGCCATCAAGTTCTTGTACTGGAAACTCCTGGGCATACAACAGgtgtttgatg ... tttttattagGTCATGTGTGCTATTATTTCGCTGGTTCTGGAGCTATATTTACAGGTGACA