1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCGCTGAAACCGGTGCCCATGGACCAGTCGACGCAGAACATAACCGCGATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgtctgattgtcttttatagtatctatgttcgaatcctctgcgtgctcggtgacttgatattatcctgtgcttttctgctctgcag
species | Zea mays |
transcript | GRMZM2G119426_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGCEST: gi|211335942|gb|FL017252.1|FL017252
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGCEST: gi|71756985|gb|DR954922.1|DR954922
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGGCCATCAGAAAGCEST: gi|29946405|gb|CB816134.1|CB816134
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGCEST: gi|148970673|gb|EE021384.2|EE021384
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGCEST: gi|71440495|gb|DR821545.1|DR821545
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
EST: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAG ATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
genomic: ATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgt ... tgctctgcagATTCAAGCGAGAAGAGATCAAGATCCAGGCTTGGGAGGACCATCAGAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCGCTGAAACCGGTGCCCATGGACCAGTCGACGCAGAACATAACCGCGATCCGTGCGGCTGCGTGGGAGGAGGCGGAGAAGGCCAAGTATTTAGCGAGgtgcttatgtctgattgtcttttatagtatctatgttcgaatcctctgcgtgctcggtgacttgatattatcctgtgcttttctgctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA