Sequence
atgc intronic sequence ATGC exonic sequenceTATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaaaatgtattgttttggcgaaagggcctctagcgtaatggttaaaaatgtattgttaagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 2
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaaaatgtattgttttggcgaaagggcc---tctagcgtaatggttaaaaatgtattgttaagg
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TACGCTCATAGAGAATGTGTGCAAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGgtaagtaattcttgcatgctttagttccttgtggcataatttgttccttctattcaacaacaggggtgaatatgggggcatcctaatagttggctcactc---
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 2
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaa-aatgtattgttttggcgaaagggcctctagcgtaatggt-taaaaatgtattgttaagg-------------------------------------------------------------------------------------------
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TATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGgtatggttcttatacatgtgatttttacttttgtgaaatttatggtattttaaatttgtggtgatggttagataatgctaatatggtcatgcattgttttaactagtaagctttattgaacaattattttgttcaattgtgtgtctcagtggtgtgtactaaattctttcaattttatatatgtaattctcag
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 4
lower sequence: AT5G62460.1 (Arabidopsis thaliana), 5'ss of exon 3
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaaaatgtattgttttggcgaaagggcctctagcgtaatggttaaaaatgtattgttaagg---
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TATGCTCATCGTAAGTGTGTTCAACGTTGGTGTAATGAGAAAGGCGACACAACCTGTGAAATATGCCACAAGgta--taatcaaatc-----acta--acaacatttttggtataatcttttggttacaccgaatgcaagtttatataactgttttttcttccttatggaaacag
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g06230.t01 (Vitis vinifera), 5'ss of exon 3
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaaaatgtattgttt-tggcgaaagggcctctagcgtaatggttaaaaatgtattgttaagg--
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TTTGCTCATAGGAAATGTGTTCAACGATGGTGCAATGAGAAAGGAGATGTAACTTGCGAGATCTGTCATCAGgta-tgatttgcttctt--aattcctagccgttatctccaagtacatctcatttgtagttgcataaatgtttatatttgagatttatattaataggtaataca
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv01s0026g02470.t01 (Vitis vinifera), 5'ss of exon 5
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgta-accaattgtttccttcaactactact--ccaaacgtagcaaaatgtat-tgttttggcgaaagggcctctagcgtaatggttaaaaatgtattgttaagg
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TATGCTCATAGGAAGTGTGTTCAACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGgtatactcgttattttttttcctttccactttctgtcctcaggaggctgcatatgtgctttttaaatcacatttcctttgatgggcccaaacctgcaagt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211209510|gb|FL044931.1|FL044931EST: AACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAG TCGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACT
genomic: AACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaatt ... tgtttatcagTCGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATAATCTGTGAAATCTGCCATGAGgtaaccaattgtttccttcaactactactccaaacgtagcaaaatgtattgttttggcgaaagggcctctagcgtaatggttaaaaatgtattgttaagg
- - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT