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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGCATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAGgtatggcacgcacagcatgattatgttcatagttcttacatttcacttctgtttcttttacttcacattttttggtcatacttagtcgccatcttaaattgaagctttatcttctccaacttaaatag

Basic information

species Zea mays
transcript GRMZM2G118917_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 5'ss of exon 4
GTAATGCATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAGgtatggcacg-cacagcatgattatgttcatagt-tcttacatttcacttctgtttcttttacttcacattttttggtcatacttagtcgccatcttaaattgaagctttatcttctccaacttaaatag
|||||||||||||||| |||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||| |  |  ||     ||  ||    ||| ||   || |||| ||  |||||||     | || |  ||   |  ||||| |  ||     | ||||   ||||||| |  ||  | |||        
GTAATGCATGGTGCAGATCGTGATATAATATGGCTTCAACGGGACTTTGGCATATATGTATGCAACCTTTTTGACACAGGCCAGgtatagtgcaacattagctggatagcggcatggtgctttgcattacagctctgttttgcaaatttga--ttaaatcatcatatt--gttattctgttaa-ccgaagcttgacatta-caaacag------

upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G54440.2 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAGgtatggcacgcacagcatgattatgttcatagttcttacatttcacttctgtttcttttacttcacattttttggtcatacttagtcgccatcttaaattgaagctttatcttctccaacttaaatag
||||| ||||| |||| ||| ||||| || ||||||||||| |||||  |||| ||||| ||||| |||||||||||||| ||||| ||            | ||| ||||  |        ||| | ||||     | | | |  |||| ||    |  |  | || |     |   || |   | |                        
GTAATCCATGGAGCAGATCGAGATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGgtttgatttctg----gttattttgttt-tgacatggtcatattacttggaggtgtatgagatcaccttaacagaacccattttggtagtaatgtagaagaatga-----------------------

upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAGgtatggcacgcacagcatgattatgttcatagttcttacatttcacttctgtttcttttacttcacattttttggtcatacttagtcgccatcttaaattgaagctttatcttctccaacttaaatag
||||||||||| |||| ||| ||||| || ||||||||||| |||||| |||||||||| ||||| || ||||||||||| ||||| ||              ||| ||||   ||   | |       ||||| ||| ||||   | ||||||  || | | || |||  |  |||    ||  |     ||     |     |||     
GTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGgtttg--------------attttgttt-cagcgatgat------cttctattt-ttttctatgacatttcctg-taaaacataggag--atccagtatccataacatacaccttttgctttatg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211507738|gb|FL332402.1|FL332402
EST:     TTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAG                         GCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCAC
genomic: TTCAACGAGACTTCAGCATATATGTGTGCAACCTTTTTGACACAGGCCAGgtatggcacg ... acttaaatagGCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCAC