Sequence
atgc intronic sequence ATGC exonic sequenceCCCGAGTACGTTGATAACTCCTGTATTAAAGTCGTGGAGGGAGGCGTTGCAGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAGgtcgagttcttagtacctatgaattttcatggctcggtgattcctaggctgttaaatttgtagaaccgtacatgtagtcatgtatttagcccatcacacagttacgcaaatagaaattgggattctgacatgtatattgttttgacgaacgaacttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118800_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 4
CCCGAGTACGTTGATAACTCCTGTATTAAAGTCGTGGAGGGAGGCGTTGCAGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAGgtcgagttcttagtacctatgaattttca-tggctcggtgattcctaggctgttaaatttgtagaaccgtacatgtagtcatgtatttagcccatcacacagttacgcaaatagaaattgggattctgacatgtatattgttttgacgaacgaacttccag
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CCTGAATACGTTGATAGCTCTTGCATAAAAGTGGTGGAGGGAGGCGTTCCAGAAACAACCGCACTCTTAGAACAAAAGTGGGATAAGATCTTCTACACAGgttaacttcttatcttgcatagttttccagtatgctaatgatttttttttttttttgctttagctgctgggtacttcactaaattattcatccatt---ctgttttgctg-------ttaagacgctaaagtgtagatattcctt-----tgaaactgcag
upper sequence: GRMZM2G118800_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S272_3V6.1 (Physcomitrella patens), 5'ss of exon 5
CCCGAGTACGTTGATAACTCCTGTATTAAAGTCGTGGAGGGAGGCGTTGCAGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAGgt----cgagttcttagtacctatgaattttcatggctcggtgattcctaggctgttaaatttgtagaaccgtacatgtagtcatgtatttagcccatcacacagttacgcaaatagaaattgggattctgacatgtatattgttttgacgaacgaacttccag
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CCTCTCTACATGGACAACTCCGTCATTCGTGTGGTGGAAGGTGGCGTGGCTGAAACCACCTTGTTGTTGGAACAGAAATGGGATAAGATTTTCTACACAGgtgcgtttagtccgaagta--gatcgaatatcaatgcacgattctttgcaaattctgaa-----tgaagccgttgacg-agttgcg-gttgaatcggttg-acag-----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148950788|gb|EC896393.2|EC896393EST: AGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAG GTAATGGAACCGTAGGACGCATCGTGATGGCAGCAGCCGCAAAGCATCTAA
genomic: AGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAGgtcgagttct ... gaacttccagGTAATGGAACCGTAGGACGCATCGTGATGGCAGCAGCCGCAAAGCATCTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCGAGTACGTTGATAACTCCTGTATTAAAGTCGTGGAGGGAGGCGTTGCAGAAACAACCTCACTCCTGGAACAGAGATGGGATAAGATCTTCTACACAGgtcgagttcttagtacctatgaattttcatggctcggtgattcctaggctgttaaatttgtagaaccgtacatgtagtcatgtatttagcccatcacacagttacgcaaatagaaattgggattctgacatgtatattgttttgacgaacgaacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG