Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgtacagttacttctgagtttgtagttttggctggtttgcacctatctaattcttgcacttgcttgtgtag

Basic information

species Zea mays
transcript GRMZM2G118467_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 5
GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgtacagttacttctgagtttgtagttttg-gctggtttgcac-------ctatctaa---ttcttgcacttgcttgtgtag
|| ||| |||||  ||||   ||||| ||||| ||||| || ||||| ||||||||||| |||||||| ||||||||||| ||||||| |  ||| |||| ||   |||  |  |||  | ||||        ||||||||   |||||| || || ||||  ||
GTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGgtacggccactgctgatttgagagtggtatgctaatctgcaggctgcagctatctaatatttcttgtacctggttgttcag

upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 4
GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgt--acagttacttctgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttgtgtag--
|||||   ||| ||  | |   | || ||||| ||||| || ||||| ||||||||||  |||||||||||||| |||||||||||    | ||  ||  |  | || |||||       ||||| ||  |  | |   |      ||||||  |    
GTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATACGAGgttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcag

upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 4
GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgt--acagttacttctgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttgtgtag--
|||||   ||| ||  | |   | || ||||| ||||| || ||||| ||||||||||  |||||||||||||| ||||| |||||    | ||  ||  |  | || |||||       ||||| ||  |  | |   |      ||||||  |    
GTGTACAGTGGCAACACAAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTTAAGAAATATGAGgttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcag

upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 4
GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgt--acagttacttc-tgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttgtgtag--
|| ||   ||||||   ||   | || ||||| ||||| || ||||| ||||||||||  ||||||||||| |||||||| |||||    | ||  ||  || || ||  |||| |     ||||| ||  | |  |   |      || |||  |    
GTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaattgttttatgtgtatgacagttctcttaagtttgtacacaacatagagtgatgtctgtttgcatgcag