1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCCCCTGTTCATGTGTTATGGCAGGGCATCATCATAATAACACACATGCCTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtacttccaccaacatactaacttaaattgtgcatttcagttattgttaactcatccaattgcaccctattatgccag
species | Zea mays |
transcript | GRMZM2G118344_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTG GCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTACEST: gi|50334694|gb|CO529820.1|CO529820
genomic: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtac ... attatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTAC
EST: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTG GCCCAAAGTTATTTATGCATTCTATAACTGATGCAGCAAATGGAGCTCTAC
genomic: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtac ... attatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCCTGTTCATGTGTTATGGCAGGGCATCATCATAATAACACACATGCCTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtacttccaccaacatactaacttaaattgtgcatttcagttattgttaactcatccaattgcaccctattatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC