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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcattagttggaattggatgattctacatcttagccattcattggaacctatgtcaacatatctgaacatccctccttgacaactgagcag

Basic information

species Zea mays
transcript GRMZM2G118003_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22546685|gb|BU098996.1|BU098996
EST:     AGAAGG-GTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|87157163|gb|DY401952.1|DY401952
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211195344|gb|FK979452.1|FK979452
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32848755|gb|CD988436.1|CD988436
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32808644|gb|CD960878.1|CD960878
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     GAAAGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTTCAGCA-G                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTT
genomic: GAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTT-CAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTT
EST: gi|32928641|gb|CF033453.1|CF033453
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|6826935|gb|AW330578.1|AW330578
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|109179241|gb|EC379886.1|EC379886
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCGGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211192948|gb|FK979444.1|FK979444
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211192942|gb|FK979438.1|FK979438
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|60397967|gb|DN230783.1|DN230783
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211195341|gb|FK979449.1|FK979449
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCT
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCT
EST: gi|211192947|gb|FK979443.1|FK979443
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211190538|gb|FK979424.1|FK979424
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTTCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|148934074|gb|EC878088.2|EC878088
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|149096066|gb|EE181748.2|EE181748
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|67024539|gb|CO453288.1|CO453288
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211197749|gb|FK979464.1|FK979464
EST:     NGAAG-TGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: -GAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|31910377|gb|CD651393.1|CD651393
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|71331060|gb|DR802360.1|DR802360
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|148969028|gb|EE019736.2|EE019736
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929351|gb|CF034163.1|CF034163
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211322184|gb|FK979481.1|FK979481
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|22472597|gb|BU037077.1|BU037077
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211322188|gb|FK979485.1|FK979485
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTT
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTT
EST: gi|211195352|gb|FK979460.1|FK979460
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211192936|gb|FK979432.1|FK979432
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929206|gb|CF034018.1|CF034018
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|148931885|gb|EC877350.2|EC877350
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|21760120|gb|BQ635661.1|BQ635661
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|148931067|gb|EC873678.2|EC873678
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32928537|gb|CF033349.1|CF033349
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211190539|gb|FK979425.1|FK979425
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTTAC-ACTATGATCTTCCTCTTGCGCTT
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTT-ACCACTATGATCTTCCTCTTGCGCTT
EST: gi|6564100|gb|AW231722.1|AW231722
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|31353887|gb|CD438244.1|CD438244
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|21390100|gb|BQ528149.1|BQ528149
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211192950|gb|FK979446.1|FK979446
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|6636984|gb|AW261256.1|AW261256
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211195346|gb|FK979454.1|FK979454
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|211192937|gb|FK979433.1|FK979433
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTTCATCAACCTTTAC
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTAC
EST: gi|28909524|gb|CB330973.1|CB330973
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929111|gb|CF033923.1|CF033923
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32848750|gb|CD988431.1|CD988431
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACTACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32837200|gb|CD976878.1|CD976878
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|148996928|gb|EE035737.2|EE035737
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|67018030|gb|CO446779.1|CO446779
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929433|gb|CF034245.1|CF034245
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929642|gb|CF034454.1|CF034454
EST:     AGAAGGTGTAGCGTATTCCAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCACCCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32928848|gb|CF033660.1|CF033660
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32847307|gb|CD986988.1|CD986988
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32837471|gb|CD977149.1|CD977149
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32929091|gb|CF033903.1|CF033903
EST:     GAAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: G-AAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32849499|gb|CD989180.1|CD989180
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|26558653|gb|CA830888.1|CA830888
EST:     AGGTGTAGCGTATTACAATAATTTGGA-AAACTATCCTGGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGGTGTAGCGTATTACAATAATTT-GATAAACTAT-CT-GCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|32928412|gb|CF033224.1|CF033224
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTG
EST: gi|101393334|gb|EB818598.1|EB818598
EST:     AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAG                         GCATGACTCCTTACATCAACCTTTTAC-ACTATGATCTTCCTCTTGCGCTT
genomic: AGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTT-ACCACTATGATCTTCCTCTTGCGCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 532

ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 336

ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 115

ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 208

ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcatt ... aactgagcagGCATGACTCCTTACATCAACCTTTACCACTATGATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGCGAAGGGAAAGTCAATCCAGAAGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGCAAGgtaatgcattagttggaattggatgattctacatcttagccattcattggaacctatgtcaacatatctgaacatccctccttgacaactgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG