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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATATTACTATGGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaaccttaaatgttgtaatacatgagaaatgtttgcgttttaatggcatgttgcttcttattatagtgtgaagattgaaaactggaactagaggatttctattagatgcagatgaaaatgctaattctttgtttctgtttctaacatatttaattgttcag

Basic information

species Zea mays
transcript GRMZM2G116919_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116919_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g09330.1 (Oryza sativa), 5'ss of exon 4
GTGGATATTACTATGGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaacctta------aatgttgtaatac----at--gagaaatgtttgcgttttaatggcatgttgcttcttatta-----tagtgtgaagattgaaaactggaactaga----ggatttctatta--gatgcagatgaaaatgctaattctttgtttc-tgtttctaacatatttaattgttcag
|||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||   | ||| |||      ||| ||| | |||    ||   || |||| || |  | | || | |   |  | | ||||      |||||   |  ||||||  | |   |  |     || || | |||  |       |||| |   | |   || ||||    | ||| || | ||| |||||||||
GTGGATATTATTACGGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaactttattttgtaatattgaattactgaaattgaaggaatgcttacaatgtgatagaagagttatacgtatttgggattagtgaacattttgaaactttggttttcatatctgacttgttttattgggattagtgaacactttgaactttggttttgcatatctgacttgttttattgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37421879|gb|CF648643.1|CF648643
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|76917612|gb|DV166918.1|DV166918
EST:     GAAACTCAAATTTCCACCGGATTATCCTTTTTAAGCCTCCAAGTTATCAG                         CAAGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGT
genomic: GAAACTCAAATTTCCACCGGATTATCC-TTTTAAGCCTCCAAG-TATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGT
EST: gi|50332246|gb|CO527372.1|CO527372
EST:     CCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: CCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|78544504|gb|DV622002.1|DV622002
EST:     GGAAACTCAAA-TTCCANCCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGAAACTCAAATTTCCA-CCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|78123531|gb|DV541915.1|DV541915
EST:     TTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: TTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|71420480|gb|DR805114.1|DR805114
EST:     TTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: TTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|31364477|gb|CD448832.1|CD448832
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|5343079|gb|AI795489.1|AI795489
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|71756603|gb|DR954540.1|DR954540
EST:     TTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: TTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|8103224|gb|AW927877.1|AW927877
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|60346203|gb|DN213176.1|DN213176
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|71320224|gb|DR796871.1|DR796871
EST:     AAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: AAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|9742575|gb|BE518723.1|BE518723
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|60341447|gb|DN208420.1|DN208420
EST:     GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: GGGAAACTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
EST: gi|16920917|gb|BM074893.1|BM074893
EST:     CTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAG                         CATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC
genomic: CTCAAATTTCCACCGGATTATCCTTTTAAGCCTCCAAGTATCAGgtgcggaaac ... aattgttcagCATGACAACCCCGAGCGGCAGATTTGCGCCACACAAAAGAATATGCTTGTC