1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCGCAGAGAGAAAATTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttttggagggtgggggtgggttgacttgtctggtgcatactgcaggtattaaatttggacatggaactaattatcaaagctttgctacttata...
species | Zea mays |
transcript | GRMZM2G116785_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAG GCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTTEST: gi|78026119|gb|DV494506.1|DV494506
genomic: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttt ... gtgcaagcagGCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTT
EST: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAG GCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTTEST: gi|71299175|gb|DR785590.1|DR785590
genomic: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttt ... gtgcaagcagGCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTT
EST: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAG GCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTTEST: gi|4887525|gb|AI677624.1|AI677624
genomic: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttt ... gtgcaagcagGCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTT
EST: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAG GCAGCCAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTT
genomic: TTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttt ... gtgcaagcagGCAGACAAGGCATCCATGCTGGATGAAATTATTGATTATGTGAAGTTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGCAGAGAGAAAATTTCAGATAGGATGAAAAATCTGCAGGATCTTGTCCCAAATTCCAATAAGgtactttttttggagggtgggggtgggttgacttgtctggtgcatactgcaggtattaaatttggacatggaactaattatcaaagctttgctacttata
- - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - CTGCAG