1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCTACTAAGAAAGTATCTGTTATTCTTTCATGGGAGAACACAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAGgtaatttcttcgttctcttcattgcccttttagtagaaggaatggtcttttttatcgtctggtatgtgcacttactaagtttaaatatctcttatatttt...
species | Zea mays |
transcript | GRMZM2G116538_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGAGAACACAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAG GAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAGEST: gi|32864823|gb|CF004505.1|CF004505
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAGgtaatttctt ... tcatgttcagGAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAG
EST: GGAGAACACAAAGAAAGCAAACATAGAAGCTAGAA-TGAAGAAGATTGAG GAACAACTGGAAAATAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAGEST: gi|211181333|gb|FL451001.1|FL451001
genomic: GGAGAACACAAAGAAAGCAAACATAGAAGCT-GAAATGAAGAAGATTGAGgtaatttctt ... tcatgttcagGAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAG
EST: CAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAG GAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAGEST: gi|18177999|gb|BM379209.1|BM379209
genomic: CAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAGgtaatttctt ... tcatgttcagGAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAG
EST: GGGAGAACGCAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAG GAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAG
genomic: GGGAGAACACAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAGgtaatttctt ... tcatgttcagGAACAACTGGAAAAGAAGAAAGCTGAATATGCTGAGAAGATGAAAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTACTAAGAAAGTATCTGTTATTCTTTCATGGGAGAACACAAAGAAAGCAAACATAGAAGCTGAAATGAAGAAGATTGAGgtaatttcttcgttctcttcattgcccttttagtagaaggaatggtcttttttatcgtctggtatgtgcacttactaagtttaaatatctcttatatttt
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG