1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGATGGAAAGTCATGAGTTGCCACACACTAACCAACCTCCCAAGTACAAAGCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaatccatatggctggttcagtatatttgttgtagacatgtctttatgcgtttattaaacatatattgcagaaaacgtgcaacaaagattcgtgattctggactaatgctaaattttggacgagctataaagatgtcacttgttttttgtgaaagcttgaaataacactaatgtcaaaattcttggggcacag
species | Zea mays |
transcript | GRMZM2G116514_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|32916798|gb|CF021610.1|CF021610
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGACGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|76286368|gb|DV025936.1|DV025936
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|78075432|gb|DV503866.1|DV503866
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|32862952|gb|CF002634.1|CF002634
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|67024823|gb|CO453572.1|CO453572
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|88749438|gb|DY533579.1|DY533579
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|148967077|gb|EE018244.2|EE018244
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|32795657|gb|CD947893.1|CD947893
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTAG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|116821652|gb|EC864979.1|EC864979
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|211018463|gb|FL453055.1|FL453055
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATHCCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCMCTGGTGATGCTTTTCAAAGGGAAGAMCGGGAACGATGGEST: gi|7555088|gb|AW681272.1|AW681272
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|32865051|gb|CF004733.1|CF004733
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|32865213|gb|CF004895.1|CF004895
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|18180175|gb|BM381385.1|BM381385
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|7262338|gb|AW585281.1|AW585281
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|88748281|gb|DY532422.1|DY532422
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|71764175|gb|DR962112.1|DR962112
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|76020120|gb|DT947290.1|DT947290
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|71309283|gb|DR790928.1|DR790928
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|88753239|gb|DY537380.1|DY537380
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|149048393|gb|EE048303.2|EE048303
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCATTCGTCTTGCTGTTAGTGGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|5006174|gb|AI712236.1|AI712236
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|78027476|gb|DV495863.1|DV495863
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGGEST: gi|101386350|gb|EB815194.1|EB815194
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
EST: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGG GTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
genomic: GCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaat ... tggggcacagGTTTGTGATTTCACTGGTGATGCTTTTCAAAGGGAAGAACGGGAACGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGAAAGTCATGAGTTGCCACACACTAACCAACCTCCCAAGTACAAAGCATACCAGTATATTTTGTGGGTTGTGGCACTCGTCTTGCTGTTAGTTGGgtaagtaaatccatatggctggttcagtatatttgttgtagacatgtctttatgcgtttattaaacatatattgcagaaaacgtgcaacaaagattcgtgattctggactaatgctaaattttggacgagctataaagatgtcacttgttttttgtgaaagcttgaaataacactaatgtcaaaattcttggggcacag
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