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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgcctaactttaacatcgtgtttcattttttttctcaaacatgtaatagagctgcacatcattatattaagcagaggaaaaagagatgagtct...

Basic information

species Zea mays
transcript GRMZM2G116204_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116204_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 3
GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgcctaactttaacat-cgtgtt----tcattttttttctcaaacatgtaatagagctgcacatcattatattaagcagaggaaaaagagatgagtct
|||||||||||||| ||||| || |||||||| ||| ||||| |||||||| | ||||||   ||  |||||| || | |  ||| || |    ||||    ||||   | ||   | |  ||||  ||   ||   |   || | ||   ||||    | |   ||   |||
GTTTGGAATTCTGATGAGCATGAGGATTTGCAGGTTATTGTGGTCATATCGCGCCCGCCTATCAAAGTgtgagtattcattgcttgaaaaaatttgttacaatcatgaatctttatagaattgtatcag--ttgtgtaattttttttttgtcagaactcaga---atcgatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771952|gb|DR969889.1|DR969889
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15590276|gb|BI674892.1|BI674892
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|14646222|gb|BI180411.1|BI180411
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|32924030|gb|CF028842.1|CF028842
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTAC
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTAC
EST: gi|149070802|gb|EE159212.2|EE159212
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|76915933|gb|DV166174.1|DV166174
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211233318|gb|FL350951.1|FL350951
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|18178242|gb|BM379452.1|BM379452
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|31558762|gb|CD527974.1|CD527974
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|71758687|gb|DR956624.1|DR956624
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60349885|gb|DN216858.1|DN216858
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|71437543|gb|DR818593.1|DR818593
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60350837|gb|DN217810.1|DN217810
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|50337089|gb|CO532215.1|CO532215
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|18179606|gb|BM380816.1|BM380816
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|76913219|gb|DV165037.1|DV165037
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|149070248|gb|EE158647.2|EE158647
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15353005|gb|BI502616.1|BI502616
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211046681|gb|FL336947.1|FL336947
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|76913213|gb|DV165036.1|DV165036
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15427248|gb|BI543070.1|BI543070
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAG
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAG
EST: gi|211522612|gb|FL101845.1|FL101845
EST:     GAAGATTTGNNCA-GT-CTTGTGATCATATCGAGACCGCCCTGCTA-GAT                         ATTTTTATATGATGATTG
genomic: GAAGATTTG--CAAGTTCTTGTGATCATATCGAGACCGCC-TGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTG
EST: gi|22936024|gb|BU572299.1|BU572299
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGC
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGC
EST: gi|18179301|gb|BM380511.1|BM380511
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60343740|gb|DN210713.1|DN210713
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|21626029|gb|BQ620950.1|BQ620950
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60346739|gb|DN213712.1|DN213712
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60396618|gb|DN229487.1|DN229487
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60339128|gb|DN206101.1|DN206101
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|24774056|gb|CA409310.1|CA409310
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
EST: gi|60351119|gb|DN218092.1|DN218092
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|32920306|gb|CF025118.1|CF025118
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
EST: gi|101398920|gb|EB821332.1|EB821332
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15590277|gb|BI674893.1|BI674893
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|14190957|gb|BG833187.1|BG833187
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211519603|gb|FL101835.1|FL101835
EST:     CACGAAGATTTGCAAGTTTTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|26456586|gb|CA828169.1|CA828169
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15660853|gb|BI698224.1|BI698224
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|78112850|gb|DV531244.1|DV531244
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211531628|gb|FL101896.1|FL101896
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|50337088|gb|CO532214.1|CO532214
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|71771951|gb|DR969888.1|DR969888
EST:     CACGAAGATTTGCAAGTTTTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|24961623|gb|CA483623.1|CA483623
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|31558761|gb|CD527973.1|CD527973
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|149014710|gb|EE044384.2|EE044384
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60357896|gb|DN224869.1|DN224869
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|24773715|gb|CA408969.1|CA408969
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|71775267|gb|DR973145.1|DR973145
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAAAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|67017253|gb|CO446002.1|CO446002
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15632591|gb|BI679684.1|BI679684
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|24774132|gb|CA409386.1|CA409386
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATG
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATG
EST: gi|32848640|gb|CD988321.1|CD988321
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGT
EST: gi|31909531|gb|CD650965.1|CD650965
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211537637|gb|FL101922.1|FL101922
EST:     CACGAAGATTTGCAAGTTCTTGKGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACA
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACA
EST: gi|14717528|gb|BI245178.1|BI245178
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|14190956|gb|BG833186.1|BG833186
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|149070647|gb|EE159060.2|EE159060
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60395026|gb|DN227895.1|DN227895
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60344805|gb|DN211778.1|DN211778
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|149014709|gb|EE044383.2|EE044383
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|15079817|gb|BI388844.1|BI388844
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|193502849|gb|AM939361.1|AM939361
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60349112|gb|DN216085.1|DN216085
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|32856366|gb|CD996047.1|CD996047
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211525622|gb|FL101863.1|FL101863
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGA
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGA
EST: gi|211534627|gb|FL101907.1|FL101907
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211124552|gb|FL355497.1|FL355497
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATTTCGAGACCACCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|28931186|gb|CB334547.1|CB334547
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGC
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGC
EST: gi|211437744|gb|FL101821.1|FL101821
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211151338|gb|FL367842.1|FL367842
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211531622|gb|FL101890.1|FL101890
EST:     CACGAAGATTTGCAAGTTCTTGNGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211525625|gb|FL101866.1|FL101866
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|211528621|gb|FL101876.1|FL101876
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|149070648|gb|EE159061.2|EE159061
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|60357015|gb|DN223988.1|DN223988
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
EST: gi|76934562|gb|DV173941.1|DV173941
EST:     CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGAT                         ATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 532

GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATTCCCCTTCGTCTGGGATGAGGACTGCTTCGAAGCAGCAAAAGACGAACTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 364

GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATTCCCCTTCGTCTGGGATGAGGACTGCTTCGAAGCAGCAAAAGACGAACTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 74

GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATTCCCCTTCGTCTGGGATGAGGACTGCTTCGAAGCAGCAAAAGACGAACTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 387

GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgc ... ctcgttgcagATTTTTATATGATGATTGGAGCATGCCTCATACAGCCGCGGTACTGAAATTCCCCTTCGTCTGGGATGAGGACTGCTTCGAAGCAGCAAAAGACGAACTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGGAATTCTGACGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCGAGACCGCCTGCTAAGATgtgagcatgcctaactttaacatcgtgtttcattttttttctcaaacatgtaatagagctgcacatcattatattaagcagaggaaaaagagatgagtct

- - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaaa