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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccggccgagctggagtctccatttgcgtgactgaaaaagctccgcactgcacgcatgacaccaaagctgaccgtgcacttctttcatcgttccctcttgcag

Basic information

species Zea mays
transcript GRMZM2G116185_T07
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116185_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g50900.1 (Oryza sativa), 5'ss of exon 5
CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccggccgagctggagtctccatttgcgtgactgaaaaagctccgcactgcacgcatgacaccaaagctgaccgtgcacttctttcatcgttccctcttgcag
||||| ||||||||||| ||||||||| |||| || ||||||||| |  ||  ||           ||   | | |  |   |||   |  |             |  ||||||||||   |       ||| |   |    | | ||||
CATCCAAGGACATGGGAAGCTCAGTTCCAGTCCGGTATCAAGgtaca--cgtacg-----------cctcgtacctaccaagaaagagtttgtg----------aatgccaaagctgatgat-----ctttttactctcttttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441211|gb|DR822261.1|DR822261
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|50330624|gb|CO525750.1|CO525750
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|93015353|gb|EB640873.1|EB640873
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|88754599|gb|DY538740.1|DY538740
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCACG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|76291868|gb|DV031436.1|DV031436
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|93016819|gb|EB642339.1|EB642339
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|78092357|gb|DV520731.1|DV520731
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|71299044|gb|DR785510.1|DR785510
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|94474694|gb|EB703652.1|EB703652
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|86473098|gb|DY239468.1|DY239468
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|101393157|gb|EB818509.1|EB818509
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|78084496|gb|DV512889.1|DV512889
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|74244543|gb|DT652457.1|DT652457
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|76011281|gb|DT938451.1|DT938451
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|149058752|gb|EE156770.2|EE156770
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|50336433|gb|CO531559.1|CO531559
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|88751941|gb|DY536082.1|DY536082
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|76910706|gb|DV163993.1|DV163993
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|71316516|gb|DR794932.1|DR794932
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|89251137|gb|DY622923.1|DY622923
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|74244764|gb|DT652678.1|DT652678
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|148933880|gb|EC877854.2|EC877854
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|71442161|gb|DR823211.1|DR823211
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
EST: gi|71323162|gb|DR798249.1|DR798249
EST:     CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG                         ACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG
genomic: CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGgtagagccgg ... cctcttgcagACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATG