1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGAGGCCCAGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtctgcgtctctctctcgaccccaacagattactcccaaagcctcaatcgcaacactagcgacgacacactcactctagcgcttttgtttgcacttcgcag
species | Zea mays |
transcript | GRMZM2G116185_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCT CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGEST: gi|89250173|gb|DY621959.1|DY621959
genomic: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtct ... cacttcgcagCATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG
EST: GGAGCACGAAGATCAACCTCATCTCCTCCGGGAGCAACCCTGCCGACTCT CATCGGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGGTAGAGCCGEST: gi|26456486|gb|CA828069.1|CA828069
genomic: GGAGCACG-AGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtct ... cacttcgcagCATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGGTAGAGCCG
EST: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCT CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGEST: gi|50336651|gb|CO531777.1|CO531777
genomic: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtct ... cacttcgcagCATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG
EST: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCT CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGGTAGAGCCGEST: gi|78112591|gb|DV530985.1|DV530985
genomic: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtct ... cacttcgcagCATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAGGTAGAGCCG
EST: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCT CATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG
genomic: AGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtct ... cacttcgcagCATCCGAGGACATGGGAGGCTCAGTTCAAGTCTGGCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAAAGTGGCAGCCGACCACAGCCACAAGTGGGTGTTCCAGGAGGCCCAGGAGCACGAGATCAACCTCATCTCCTCCTGGAGCAACCCTGCCGACTCTgtaagcgtctgcgtctctctctcgaccccaacagattactcccaaagcctcaatcgcaacactagcgacgacacactcactctagcgcttttgtttgcacttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA