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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAGGTACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatgttcttagttgtcaaatgcttctcttaatgactgtttttttgtttctttgtcactgtaagagatataagccatcatttgcaatctaatgta...

Basic information

species Zea mays
transcript GRMZM2G116087_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116087_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 3
GTTGGGAGGTACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcat--------gttcttagttgtcaaatgcttctcttaatgactgtttttttgtttctttgtcactgtaag-agatataagccatcatttgcaatctaatgta
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GTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAGgtaatgcataaactcgtgttcttagacatctagttcttctct--gtaggctttcagcattccttttgttagtataggcaaacatagtccttcattgactaat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148966792|gb|EE017885.2|EE017885
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|149029771|gb|EE286265.2|EE286265
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|60356414|gb|DN223387.1|DN223387
EST:     GAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: GAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|148973538|gb|EE024639.2|EE024639
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|148938252|gb|EC882544.2|EC882544
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTT-GCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|149088482|gb|EE177591.2|EE177591
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|28873742|gb|CB329688.1|CB329688
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|78089260|gb|DV517634.1|DV517634
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|71762890|gb|DR960827.1|DR960827
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|94479717|gb|EB708675.1|EB708675
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|211304785|gb|FL143334.1|FL143334
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|78111571|gb|DV529968.1|DV529968
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|148952137|gb|EC897931.2|EC897931
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|71448582|gb|DR829632.1|DR829632
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|149086680|gb|EE176220.2|EE176220
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: gi|148961522|gb|EE012274.2|EE012274
EST:     TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA