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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAGgtatttatctcagtcttgtaattccttttttttatcttcctttgtgttgtgtttgttgtgcatcagtaacactgtagtatgagcacttctcatttgcag

Basic information

species Zea mays
transcript GRMZM2G115975_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g24180.1 (Oryza sativa), 5'ss of exon 4
AGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAGgtatttatctcagtcttgtaattccttttttttatcttcctttgtgttgtgtttgttgtgcatcagtaacactgtagtatgagcacttctcatttgcag
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||| |||||  |||   ||||        | |||  | |||           |    ||| |||||| ||  ||| ||| ||||||||||
AGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTGGGAGGAATTGACTTGAATAATTCTGGGAGgtatttacctcattcttgagattttcttttcc------cttttaggatgt-----------acagataatactgtattaaaagctcttatcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211179361|gb|FL014689.1|FL014689
EST:     GGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAG                         TGTGGTAGTCAGAGAAGACAAGAAGTTATTGACTGTACTTTTCCCAGATGG
genomic: GGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAGgtatttatct ... tcatttgcagTGTGGTAGTCAGAGAAGACAAGAAGTTATTGACTGTACTTTTCCCAGATGG
EST: gi|50327514|gb|CO522640.1|CO522640
EST:     GGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAG                         TGTGGTAGTCAGAGAAGACAAGAAGTTATTGACTGTACTTTTCCCAGATGG
genomic: GGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAGgtatttatct ... tcatttgcagTGTGGTAGTCAGAGAAGACAAGAAGTTATTGACTGTACTTTTCCCAGATGG