Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattcctttcatttctaggtcaagcaacttctgtactggattcacactccaattaaatctcttttctcttttgtggttttag

Basic information

species Zea mays
transcript GRMZM2G115049_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g45950.1 (Oryza sativa), 5'ss of exon 4
GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattcctttcatttctaggtcaagcaac-ttctgta-ctggattcacactccaattaaatctcttttctcttttgtggttttag
 ||||||||||| ||||||||||||| |||||||| |||||| |||||| |||| |||   ||||||| || |||||||| |||||||||||| ||   | |||| ||||||| |    |||  | ||| | ||  |||   | |||  |  ||| || |   | | || |||||| ||
TTGATAACTACATTCACAGTTCATGATCTGGGCACTCCAGGCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgc-catttcttttctagcttgtacaatatgctgaatctcaattttgagtcctgtataatttcctccgtgtgtt-tggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348128|gb|DN215101.1|DN215101
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|18176253|gb|BM351273.1|BM351273
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211067138|gb|FL332478.1|FL332478
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGG
EST: gi|211118967|gb|FL349445.1|FL349445
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTG
EST: gi|211282848|gb|FL309040.1|FL309040
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTATCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|60349522|gb|DN216495.1|DN216495
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71314453|gb|DR793854.1|DR793854
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|101387379|gb|EB815705.1|EB815705
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211455059|gb|FL323071.1|FL323071
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71436182|gb|DR817232.1|DR817232
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211463261|gb|FL358480.1|FL358480
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGGTTGCTGCAAGTGTTGG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTG-TTGCTGCAAGTGTTGG
EST: gi|15545704|gb|BI643498.1|BI643498
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149014219|gb|EE043774.2|EE043774
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|76917795|gb|DV167006.1|DV167006
EST:     TTTTATGTGTTCCTTTCCCGTACCAGAAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: TTTTATGTGTTCCTTTCCCGTACCAG-AAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149081524|gb|EE170660.2|EE170660
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149108403|gb|EE292740.2|EE292740
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|76282636|gb|DV022204.1|DV022204
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211455392|gb|FL341711.1|FL341711
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211505801|gb|FL357190.1|FL357190
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTATCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|84351536|gb|DW245941.1|DW245941
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|91056164|gb|EB166582.1|EB166582
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71762973|gb|DR960910.1|DR960910
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149110783|gb|EE294300.2|EE294300
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211500080|gb|FL310132.1|FL310132
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTT-GCACCACCATGCTGGTGTTGCTGCAAGTGTTGG
EST: gi|101399940|gb|EB821817.1|EB821817
EST:     GAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|89764236|gb|DY691118.1|DY691118
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|29130483|gb|CB381187.1|CB381187
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGNGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|76917796|gb|DV167007.1|DV167007
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71303230|gb|DR787717.1|DR787717
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|37424398|gb|CF649931.1|CF649931
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|101395788|gb|EB819821.1|EB819821
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211095737|gb|FL312081.1|FL312081
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTG
EST: gi|9794381|gb|BE552689.1|BE552689
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71448665|gb|DR829715.1|DR829715
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|32909156|gb|CF013968.1|CF013968
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|94474851|gb|EB703809.1|EB703809
EST:     GAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|74241152|gb|DT649066.1|DT649066
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71430935|gb|DR811985.1|DR811985
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|148963152|gb|EE014121.2|EE014121
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149080662|gb|EE169719.2|EE169719
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|32906855|gb|CF011668.1|CF011668
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATAGCTGGTGTTGCTGCAAGTGTTGG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCAT-GCTGGTGTTGCTGCAAGTGTTGG
EST: gi|211512108|gb|FL316104.1|FL316104
EST:     GCTTGAAGGCMATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCT
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCT
EST: gi|149013973|gb|EE043481.2|EE043481
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211148579|gb|FL032470.1|FL032470
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCANAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACC
EST: gi|93012482|gb|EB638002.1|EB638002
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|88748848|gb|DY532989.1|DY532989
EST:     GCAATTTTATGTGTTCTTTTCCGGTCCCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|110949561|gb|EE169718.1|EE169718
EST:     TTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTA-TTGCCACCACCATGCTGGTGTTGCTGCAAGTGTTGG
genomic: TTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTG-CACCACCATGCTGGTGTTGCTGCAAGTGTTGG
EST: gi|76289467|gb|DV029035.1|DV029035
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|213191071|gb|FM193242.1|FM193242
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|91873213|gb|EB403170.1|EB403170
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|50327068|gb|CO522194.1|CO522194
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149107027|gb|EE188922.2|EE188922
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|148950071|gb|EC895603.2|EC895603
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71757445|gb|DR955382.1|DR955382
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|50325873|gb|CO520999.1|CO520999
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|149112693|gb|EE295526.2|EE295526
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|78111026|gb|DV529423.1|DV529423
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|32907264|gb|CF012077.1|CF012077
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|78109070|gb|DV527487.1|DV527487
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211148582|gb|FL032473.1|FL032473
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|60341814|gb|DN208787.1|DN208787
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71759666|gb|DR957603.1|DR957603
EST:     AATTTTATGTG-TCCTTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: AATTTTATGTGTTCC-TTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|9255285|gb|BE345753.1|BE345753
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|15590470|gb|BI675086.1|BI675086
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211033926|gb|FL358169.1|FL358169
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTTGG
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTT-GG
EST: gi|101390351|gb|EB817110.1|EB817110
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|211222771|gb|FL342810.1|FL342810
EST:     GCTTGAAGGCAATTTTATGCGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
EST: gi|71440869|gb|DR821919.1|DR821919
EST:     GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAG                         GCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC
genomic: GCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTTGTTAACCTTTCTGGTGTATTCGGAACTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 257

GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTTGTTAACCTTTCTGGTGTATTCGGAACTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 213

GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTTGTTAACCTTTCTGGTGTATTCGGAACTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 676

GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattc ... gtggttttagGCTGAACTCCAGTATTTGCACCACCATGCTGGTGTTGCTGCAAGTGTTGGCCTAAATGCAAACCCTGTTGTTAACCTTTCTGGTGTATTCGGAACTAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATAACTACAATCACAGTTCATGAGCTGGGCACACCAGGCTTGAAGGCAATTTTATGTGTTCCTTTCCCGTACCAGAAATCTGCAAAGgtatatattcctttcatttctaggtcaagcaacttctgtactggattcacactccaattaaatctcttttctcttttgtggttttag

- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG