1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGTGAGGGTGATCCTACATTTCGAGAAGAGCTTCTTAACTTTACACAAAGGGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaatttctgtcttggtagaagattgccctgaccctgcttatcacctcatgattttcttgttttctgataccaagttctctgcag
species | Zea mays |
transcript | GRMZM2G114513_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGATTGTTCTGCCEST: gi|211079577|gb|FL056323.1|FL056323
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCC
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGATTGTEST: gi|21760018|gb|BQ635559.1|BQ635559
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGT
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAAEST: gi|211050621|gb|FL256688.1|FL256688
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAA
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGGTTGTTCTGCCTGGGTGCGCACATATGGNTTGTTTTTGGAAGAAAEST: gi|33099286|gb|CF059246.1|CF059246
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAA
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCAAGTCCAATTG CTTGGGATTGTTEST: gi|211092899|gb|FL067769.1|FL067769
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTT
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAAEST: gi|211053572|gb|FL256699.1|FL256699
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAA
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGGTTGTTCTGCCTGGGNGCGCACATATGGTTTGTTTTTGGAAEST: gi|211095366|gb|FL067775.1|FL067775
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAA
EST: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTG CTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAA
genomic: GGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaattt ... ttctctgcagCTTGGGATTGTTCTGCCTGGGTGCGCACATATGGTTTGTTTTTGGAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGAGGGTGATCCTACATTTCGAGAAGAGCTTCTTAACTTTACACAAAGGGGGCGTATTCTGCAACTTTCAAACTTTAAGGATGACTCCAGTCCAATTGgttagaatttctgtcttggtagaagattgccctgaccctgcttatcacctcatgattttcttgttttctgataccaagttctctgcag
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