Sequence
atgc intronic sequence ATGC exonic sequenceTAGTTGGGGCTCAGCATTTTGCAAAAGCTGCAATGGCTGCTGGCGCGTTTAATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAGgtcatgatcctgacgattcttttatcttttatatttgttgctctgatcggtcactaggataaccaaatatgaaagttcaaaatgtttttgcctgctactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G114394_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 5'ss of exon 3
TAGTTGGGGCTCAGCATTTTGCAAAAGCTGCAATGGCTGCTGGCGCGTTTAATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAGgtcatgatcctgacgattcttttatcttttata-tttgttgctctgatcggtcactaggataaccaaatatgaaagttcaaaatgtt---tttgcctgctactt------------------------------------------------------------------
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TAGTTGGTGCCCAGCATTTTGCAAAAGCTGCAATTGCTGCTGGAGCGTTTAATCCTGATGTCGATTTTGCATCTCCATTAGATGGCGATGGCCATGGAAGgtcatgctcctaattaatatatgttctgttctagtttcttataccaagaaaaatgccatacatgaaaattgttctgtccaaagaattagctattctggttgtgtttcatcttgagaagaatggcatgacttatctagttatctgatacaaagatgctttcccttaaacag
upper sequence: GRMZM2G114394_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 4
TAGTTGGGGCTCAGCATTTTGCAAAAGCTGCAATGGCTGCTGGCGCGTTTAATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAGgtcatgatcctgacgattcttt-tatcttttatatttgttgctctg----atcggtcactaggataaccaaatatgaaagttcaaaatgtttttgcctgctactt
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TTGTTGGAGCCCAACATTTTGCAGAAGCTGCAATAGCAGCTGGTTCATTTAATCCTTCAGTTGATTTTGCTTCTCCTTTGGATGGTGATGGGCATGGAAGgttagatcccatacacttttttgtatccattccattgggaaaacagtgaaaatggttttgtatttgttcagttatgtatggacaaat--atgaagtttggaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351455|gb|CD435812.1|CD435812EST: AATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAG TCACACAGCTGCAATTGCTGCTGGAAACAATGGGGTCCCAGTGCGAATGCA
genomic: AATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAGgtcatgatcc ... ccttcaacagTCACACAGCTGCAATTGCTGCTGGAAACAATGGGGTCCCAGTGCGAATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGTTGGGGCTCAGCATTTTGCAAAAGCTGCAATGGCTGCTGGCGCGTTTAATCCCGATGTTGAATTTGCATCTCCATTAGATGGTGATGGTCATGGAAGgtcatgatcctgacgattcttttatcttttatatttgttgctctgatcggtcactaggataaccaaatatgaaagttcaaaatgtttttgcctgctactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG