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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACACCTGGAAGGCGGTGATAAAGgtaaggatggggtcagtttggcttgtcatttttttcatatataaaataaatatgacatacatctgatattgtattaccattgtcaaatgtag

Basic information

species Zea mays
transcript GRMZM2G114220_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211392505|gb|FL156794.1|FL156794
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211389874|gb|FL156779.1|FL156779
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211389876|gb|FL156781.1|FL156781
EST:     CCACACCTGGAAG-CGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211389878|gb|FL156783.1|FL156783
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392499|gb|FL156788.1|FL156788
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392496|gb|FL156785.1|FL156785
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211389879|gb|FL156784.1|FL156784
EST:     CCACACCTGGAAG-CGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|50338446|gb|CO533572.1|CO533572
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392507|gb|FL156796.1|FL156796
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392498|gb|FL156787.1|FL156787
EST:     CCACACCTGGAAG-CGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|76909136|gb|DV163240.1|DV163240
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|6637070|gb|AW261342.1|AW261342
EST:     CCACACCTGGAAGGCGGCGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|71417924|gb|DR804257.1|DR804257
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392504|gb|FL156793.1|FL156793
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392503|gb|FL156792.1|FL156792
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|91049005|gb|EB159423.1|EB159423
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|32859779|gb|CD999460.1|CD999460
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|32862738|gb|CF002420.1|CF002420
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211395124|gb|FL156801.1|FL156801
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392510|gb|FL156799.1|FL156799
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211395123|gb|FL156800.1|FL156800
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211392502|gb|FL156791.1|FL156791
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|211389877|gb|FL156782.1|FL156782
EST:     CCACACCTGGAAG-CGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|91873355|gb|EB403312.1|EB403312
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|14242735|gb|BG840580.2|BG840580
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|213183590|gb|FM196389.1|FM196389
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG
EST: gi|93015584|gb|EB641104.1|EB641104
EST:     CCACACCTGGAAGGCGGTGATAAAG                         TAATAATGCCACCTTCTGCCCTTGATCGTCTTG
genomic: CCACACCTGGAAGGCGGTGATAAAGgtaaggatgg ... tcaaatgtagTAATAATGCCACCTTCTGCCCTTGATCGTCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACACCTGGAAGGCGGTGATAAAGgtaaggatggggtcagtttggcttgtcatttttttcatatataaaataaatatgacatacatctgatattgtattaccattgtcaaatgtag

- - -  TGGAAG