Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCACTTGGCTATGATAACTGTGCAATCTGAAAATCAAAGTAGAAAGAAGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactctatttctgtgctcgtattaccaatttaatgtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcag

Basic information

species Zea mays
transcript GRMZM2G114172_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114172_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g65450.1 (Oryza sativa), 5'ss of exon 5
GGATCACTTGGCTATGATAACTGTGCAATCTGAAAATCAAAGTAGAAAGAAGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactctatttctgtgctcgtattaccaatttaatgtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcag
|||||||||||| ||||||||||||||||||||||| |       |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||          |||  |||  |||        |||| |  ||||   | |  ||||  ||||  ||||   ||||| |||| |  | |||||||||
GGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGgttagta----------gtgg-cgtggtac--------tgtgaatttgtgactgattctcattgaattatttgctcattgcttctgtttctttcatatgcag

upper sequence: GRMZM2G114172_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 5
---------GGATCACTTGGCTATGATAACTGTGCAATCTGAAAATCAAAGTAGAAAGAAGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactctatttctgtgct-cgtattaccaatttaat--gtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgt-cttctccatatgcag
          || ||| |||| ||||| || || ||  ||     ||   |         |   ||||| ||||||||||||||| | || |||||| ||||||||||||| | || | |            |     |   ||||  |   ||||    |  |||   |   |     |  |||    |   || |   || | || | | |  
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgt-aatattatgcaataaaataacacgccatttattttcttaatggaaagttaatagaattatgttagcatatttg---ttcaatcatacactcccccgtctac--

upper sequence: GRMZM2G114172_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
---------GGATCACTTGGCTATGATAACTGTGCAATCTGAAAATCAAAGTAGAAAGAAGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactctatttctgtgct-cgtattaccaatttaatgtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcag
          || ||| |||| ||||| || || ||  ||     ||   |         |   ||||| ||||||||||||||| | || |||||| |||||||||||||         | |  | |||     | || || |   || |       |  | |    | | |       |    || |  |  |    ||      |||  
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaaca-tgccatttattttcttaatggaaagttaacaggagtatgttagcatatttgttcaatcatacattgc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211170844|gb|FL475252.1|FL475252
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: gi|20337038|gb|BQ172668.1|BQ172668
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGACCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: gi|37383817|gb|CF628944.1|CF628944
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: gi|86470825|gb|DY237195.1|DY237195
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: gi|37377229|gb|CF625199.1|CF625199
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: gi|5791422|gb|AI978214.1|AI978214
EST:     AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG                         TACTACAACGAAAAGAACACCATAATGTTTGATGACCTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC