1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTGTATCTTATGTCAAACTTTTCTGTGCTTCATTGGTCAGCAATGACTTATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatccctttccaaatgtccttttcaacccgtcgtttttcttgcagatccttgtctaattgatgttatggtaacacagcctcatgttctttgtgctttgacttcag
species | Zea mays |
transcript | GRMZM2G113726_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTAAGAAGCAAGAAGTCATTAATCTTCTAGGACATGTGACACCGTGCGAG AAGCACCATCGGAATTACTACGAGGGGTTTTATCGGACTCCAGTCAGTACTEST: gi|47962732|gb|CN845441.1|CN845441
genomic: ATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatcc ... ttgacttcagAAGCACCATCGGAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACT
EST: GAAGCAAGAAGTCATTAATCTTCTAGGACATGTGACACCGTGCGAG AAGCACCATCGGAATTACTACGAGGGGTTTTATCGGACTCCAGTCAGTACTEST: gi|109179023|gb|EC379766.1|EC379766
genomic: GAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatcc ... ttgacttcagAAGCACCATCGGAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACT
EST: GTAAGAAGCAAGAAGTCATTAATCTTCTAGGACATGTGACACCGTGCGAG AAGCACCATCGGAATTACTACGAGGGGTTTTATCGGACTCCAGTCAGTACTEST: gi|60349121|gb|DN216094.1|DN216094
genomic: ATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatcc ... ttgacttcagAAGCACCATCGGAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACT
EST: ATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAG AAGCACCATCGGAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACT
genomic: ATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatcc ... ttgacttcagAAGCACCATCGGAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTATCTTATGTCAAACTTTTCTGTGCTTCATTGGTCAGCAATGACTTATAAGAAGCAAGAAGTCATTAATCTTCAAGGACATGTGACACCGTGCGAGgtacatatccctttccaaatgtccttttcaacccgtcgtttttcttgcagatccttgtctaattgatgttatggtaacacagcctcatgttctttgtgctttgacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT