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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGAACCTCTTCTGCAAGTGGTGGAGTGTCGCATTTGTCAGGAGGAAGATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAGgttcgtgttactccattcttcttattcatttattatggatatataattatactccatatctaattattatctgaagtgtcaagagttttgcctgtagcga...

Basic information

species Zea mays
transcript GRMZM2G113619_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 5'ss of exon 3
AGCGGAACCTCTTCTGCAAGTGGTGGAGTGTCGCATTTGTCAGGAGGAAGATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAGgttc--gtgttactccattcttcttattcatttattatggatatataattatac-tccatatctaa---ttattatctgaagtgtcaagagttttgcctgtagcga
||  ||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| || |||||||||||||||||||     |||  ||||       | |  ||  ||     | | || | |    ||  | | |||     |  || |||| |      || ||  |  ||     
AGAAGAACCTCTTCTGCAGTTGGTGGAATGTCGCATTTGTCAGGAGGAAGACAGTATAAAAAATCTGGAGAGCCCATGTGCCTGTACTGGCAGTCTAAAGgttcaaacattatcccatgaactccagtt-ttagttgcaagtgtttattcaagtatctctgtttaaagggcaacatatgaaattaggcaagattaactcgt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8551597|gb|BE128942.1|BE128942
EST:     ATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAG                         TATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTA
genomic: ATAGTATCAAAAATTTAGAGAGTCCATGTGCTTGCACTGGCAGTCTAAAGgttcgtgtta ... ttctatgcagTATGCTCATAGGACTTGTGTACAACGATGGTGCAATGAGAAAGGAGATGTA