1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCTCTATACTGCCTTGGCCTATTTCTTGGCACTATATATTCTGTTCCTCCATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgctcctcccttctccgtatttattattttattttaataatatcattgaaattctgcttattttgcgcaataaaaattctgctgcttctttttc...
species | Zea mays |
transcript | GRMZM2G113476_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACG GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCAEST: gi|13558184|gb|BG549540.1|BG549540
genomic: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgct ... ttttgattagGTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCA
EST: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACG GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCAEST: gi|71445925|gb|DR826975.1|DR826975
genomic: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgct ... ttttgattagGTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCA
EST: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACG GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCAEST: gi|148973603|gb|EE024711.2|EE024711
genomic: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgct ... ttttgattagGTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCA
EST: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACG GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCA
genomic: CATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgct ... ttttgattagGTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCTATACTGCCTTGGCCTATTTCTTGGCACTATATATTCTGTTCCTCCATTCAGACTGAAGAGATATCCGGTTGCTGCTTTTCTTATCATTGCAACGgtgctttgctcctcccttctccgtatttattattttattttaataatatcattgaaattctgcttattttgcgcaataaaaattctgctgcttctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT