Sequence
atgc intronic sequence ATGC exonic sequenceTCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATTGGGGACATGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataaattacgaaatgaagggatctgcattttagtttctctgtggcacatgttatgctgagttgtcaaagttgcttctttgtgtgttttttttgtaatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g49040.1 (Oryza sativa), 5'ss of exon 4
TCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATTGGGGACATGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataaattacgaaatgaagggatctgcattttagtttctctgtggcacatgttatgctgagttgt----caaagttgcttctttgtgtgttttttttgtaatttcag
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TCTCCGGTGCTGGCCAGGTGGCCTGTGCCTTTCAAGATCTATCGGGGACATGGATGTCGGGGAGTTCATTGTGCCGATTCCACATGTGAAGCAAGTGAAGgtgggtagctattagaaagtggatgcaatttctagcttctttttctatggtgtattgtagtataatttctttttcaaggttgtcacttt-----cttactcggtaattgcag
upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G29060.1 (Glycine max), 5'ss of exon 5
TCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATTGGGGACATGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataaattacgaaatgaagggatctgcattttagtttctctgtggcacatgtta-tgctgagttgtcaaagttgcttctttgtgtgttttttttgtaatttcag--
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TCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGACGTGGGAGAATTTATTGTCCCAATACCACATGTCAAGCAAGTGAAGgt--aagctagtttcattttgtagtc-ttagtttattgatcgatggccattatgtggaagtgtttagtactaaatttcagcactcctgaccttctcttattggttccccag
upper sequence: GRMZM2G113016_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G38270.1 (Glycine max), 5'ss of exon 5
TCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATTGGGGACATGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataaattacgaaatgaagg---gatctgcattttagtt-tctctgtggcacatgttatgctgagttgtcaaagttgcttctttgtgtgttttttttgtaatttcag---
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TCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACGGACGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGgt--aagctagtttcattttgaagtcttagtttatatattgatggtcatttttatgtg-gagatgtttagt-actaaatttcagcactgatgaccttctcttattggttccccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89251895|gb|DY623681.1|DY623681EST: TGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACGCTGGAGGAAGGCTGATAATAGCATCCGATGGCATATGGGAT
genomic: TGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataa ... gtaatttcagCTATCAAACGCTGGAGGAAGGCTGATAATAGCATCCGATGGCATATGGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCCGGTGCTGGCCTGGTGGCTTGTGCCTTTCAAGATCCATTGGGGACATGGATGTTGGGGAGTACATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttgatataaattacgaaatgaagggatctgcattttagtttctctgtggcacatgttatgctgagttgtcaaagttgcttctttgtgtgttttttttgtaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG