1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGTGAACAGTTGGAAACACCCCATGTTAATGCGGATGATCTTTCAGTGAGGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttactaatttcatagtttcctttgccttttgaaatatgttaactgttagtctgttactttcttttgatgtttctatgctgcaactttgtttcgat...
species | Zea mays |
transcript | GRMZM2G112337_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148930867|gb|EC873288.2|EC873288
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTTGAGT-CAGTGCACGATCTEST: gi|148999825|gb|EE036849.2|EE036849
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGT-GAGTTCAGTGCACGATCT
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAAGT-CAGTGCACGATCTEST: gi|149096273|gb|EE181983.2|EE181983
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGA-GTTCAGTGCACGATCT
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148964767|gb|EC906024.2|EC906024
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|148995698|gb|EE034921.2|EE034921
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAEST: gi|149015047|gb|EE044793.2|EE044793
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGA
EST: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTCEST: gi|71324224|gb|DR798815.1|DR798815
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
EST: GGAGATTAAATGAATATCTTTCCGAACTACTAGCCCTGCAAAAGGAAAAG AGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
genomic: GGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttact ... tgcattgcagAGTACTAGGCTCTCAAGGATTCTTGAATCCGTGAGTTCAGTGCACGATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGAACAGTTGGAAACACCCCATGTTAATGCGGATGATCTTTCAGTGAGGAGATTAAATGAATATCTTTCTGAACTACAAGCCCTGCAAAAGGAAAAGgttgtttactaatttcatagtttcctttgccttttgaaatatgttaactgttagtctgttactttcttttgatgtttctatgctgcaactttgtttcgat
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA