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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAAGCAAGTCTGCCCTTCCAGCTCCAATTCTGTCAACGCCGGGGCTTGCGAGCCGGCGCGCCTCGCCGGCAACTTCCGCCACAACAACAAATTCAGgtcagcatagcgttgatgcagcgaacagaacggccacctgttgctgtcagcacttgcgacctctgacaggtgatcaactgacgagtttttgaag

Basic information

species Zea mays
transcript GRMZM2G112039_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112039_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g36040.1 (Oryza sativa), 5'ss of exon 4
AAAGGAAGCAAGTCTGCCCTTCCAGCTC---CAATTCTGTCAACGCCGGGGCTTGCGAGCCGGCGCGCCTCGCCGGC---AACTTCCGCCACAACAACAAATTCAGgtcagcatagcgttgatgcagcgaacag-aacggccacc-tgttgc-tgtca-gcac-ttgcgacctctgacaggtgatcaac---tgacg--agtttttgaag
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------AGCAAATCTGCCCTTCCAGCTCCTCCGATCCCGTCAATGCCGGCGTTTGCGAGCCGGCGCACCTCGCCGGCGGCAGCTTCCGCCACGCCAGCAAGTTCAGgtgagctcctcgtcccagcagccggcgccggcggcggcggtgccgcgcgccatgcacgttgctgcgtctg-cgtgtgactgatccgtgacggaaacgtgtgcag