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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCCTTGGAGATTTGGAAGGGGTAGCGTTCTTTCGGCGCTGAAGAAATCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttcttccgctctctatgcaggtacatgttcttgtccgtaaaaatgtaagcttttatttacgttttcattatcttttgccag

Basic information

species Zea mays
transcript GRMZM2G111954_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111954_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g04990.1 (Oryza sativa), 5'ss of exon 4
CCCTTCCTTGGAGATTTGGAAGGGGTAGCGTTCTTTCGGCGCTGAAGAAATCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttcttccgctctctatgcaggtacatgttcttgtccgtaaaaatgtaagcttttatttacg-----ttttcattatcttttgccag
| ||||| |||||||||||  | || || |||||||| || |||||||||||||| |||||||| ||  || | || || |||||||| ||||| || |||| || |  || ||||| | | | | |||||  | || || |||||  |  |   ||||  |  |      ||||  || ||| ||  |||
CACTTCCATGGAGATTTGGCCGAGGAAGTGTTCTTTCCGCACTGAAGAAATCGCTTGACCGTCTTGGGTTATCTTCAGTTGAGCTCTACCAACTTCATTGgtcggcttgtctgctctttct-ctgatacatactttt-tctgtaaattttgagcattttgatctcagccgcttttgtttctctgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281356|gb|DV020924.1|DV020924
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|149077171|gb|EE165834.2|EE165834
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|148931921|gb|EC875135.2|EC875135
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|148935240|gb|EC879277.2|EC879277
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|149063769|gb|EE157636.2|EE157636
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|149013468|gb|EE042982.2|EE042982
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|148972626|gb|EE023587.2|EE023587
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|148982464|gb|EE028329.2|EE028329
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|148936271|gb|EC880349.2|EC880349
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG
EST: gi|149111659|gb|EE190803.2|EE190803
EST:     TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTG                         GCCAGGGATTTGGGGGAACGAAG
genomic: TCGCTAGACCGTCTAGGCCTAGCGTCTGTCGAGCTCTATCAACTCCACTGgttggttctt ... cttttgccagGCCAGGGATTTGGGGGAACGAAG