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GTTCTTGTTGAGTTGGCTGAACTCCAAGACCGTGAGGTAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatgcttcgcttttctcgctattgtgaattgcccttccagttttcagatgcacatgcactaacaccgatttgtttcttattgtcag
species | Zea mays |
transcript | GRMZM2G110626_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTEST: gi|211160352|gb|FL101552.1|FL101552
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCAGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGA-CCATCCAACCTCTATAATCAGTEST: gi|211160359|gb|FL101559.1|FL101559
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCAGCAGANCTGCTCAAG AGAACCAACGAEST: gi|211158769|gb|FL101548.1|FL101548
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGA
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAEST: gi|211158771|gb|FL101550.1|FL101550
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAA
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTEST: gi|22491073|gb|BU050996.1|BU050996
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCAGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAEST: gi|211160357|gb|FL101557.1|FL101557
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCA
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTEST: gi|211160358|gb|FL101558.1|FL101558
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCAGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTEST: gi|211160351|gb|FL101551.1|FL101551
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: AGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTTGCTCAAG AGAGCCA-CGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGEST: gi|211160353|gb|FL101553.1|FL101553
genomic: AGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCT-GCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAG
EST: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCAGCAGAGCTGCTCAAG AGAGCCAACGATCTTGTGAAGAA
genomic: TAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatg ... ttattgtcagAGAGCCAACGATCTTGTGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGTTGAGTTGGCTGAACTCCAAGACCGTGAGGTAGGAGATGGAACAACTTCCGTTGTCATCATAGCGGCAGAGCTGCTCAAGgtaattaatgcttcgcttttctcgctattgtgaattgcccttccagttttcagatgcacatgcactaacaccgatttgtttcttattgtcag
- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT