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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaacttcctttgtgtattcttaatcctttgatagattatgatacatggtaattatgagtttagttattttgttgatagagcacactaattttct...

Basic information

species Zea mays
transcript GRMZM2G109039_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109039_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g48964.1 (Oryza sativa), 5'ss of exon 4
GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaacttcctttgtgtattcttaatcctttgatagattatgatacatggtaattatgagtttagttattttgttgatagagcac--actaattttct---
|| |||||||| || || ||||| ||||| || ||||| ||||| |||||||||||||| || ||||||||||| ||||||||||||||| | | ||||   ||   | || |   |||  |   |||| ||  | ||     ||||| ||   | | |||   | ||||  ||||    |  |  | |   
GAATGCAAACCGACTGAAAAAGGCGGGATGTATTATGAATTTAGGCGAAATACTAGATCAGTAAAATCAACTATACTACATTTTCAGgtgggctcactt---ttacatcttttacttccccttcaagataatattccaccactattatcaga--aataattgattagatatcgcactagttggtagtattta

upper sequence: GRMZM2G109039_T03 (Zea mays), 5'ss of exon 4
lower sequence: PP1S32_210V6.3 (Physcomitrella patens), 5'ss of exon 5
GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaacttcctttgtgtattcttaatcctttgatagattatgatacatggtaattatgagtttagttattttgttgatagagcacactaattttct--
|| ||||||     ||||||||| || |  |  | ||| ||| | |  || |||||||||||||||||||||||  | ||||||||||| |||     |    |   |||| |  ||  |||  |   ||   ||   | ||    | |  ||| |   |||||| |   ||    |  | ||      
GAGTGCAAAGTGGTAGAGAAAGGAGGAAAGTTTTTTGATTTTCGGCACAACACTAGATCGGTTAAATCAACTATCGTTCATTTTCAGgtcagtccctcttagattcatattgtctatgtttttttt--ttcccatgagttgtgtgcagggcttttggctttttgtggcgtgacattatcagttggagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211166255|gb|FL395975.1|FL395975
EST:     AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAG                         CTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT
genomic: AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT
EST: gi|211150113|gb|FL386529.1|FL386529
EST:     AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAG                         CTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT
genomic: AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT
EST: gi|60342865|gb|DN209838.1|DN209838
EST:     AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAG                         CTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT
genomic: AGTTTAGACGAAATACTAGATCGGTTAAATCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTAGAAATTTGGTATGGGCAACGTCCAAGCACGACATCTACCTAGTATCT