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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTACCTAGTATCTCATTACTCAATTCGTCACTGGTCAGCATTGAGTGGTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataacattttctttcatgttgtgtgttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgtacag

Basic information

species Zea mays
transcript GRMZM2G109039_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109039_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g48964.1 (Oryza sativa), 5'ss of exon 5
CATCTACCTAGTATCTCATTACTCAATTCGTCACTGGTCAGCATTGAGTGGTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataacattttctttcatgttgtgtg-----ttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgt----acag
  ||||  || | || |||| |||  ||| ||| ||||| ||| |||||||| | ||||| || ||||| || |||||||||||||||||||| |||||||||   || | | || ||   ||||   |      || | | | |  | |||    ||  |  | |  || |||||       || || |    ||||
TGTCTATTTAATGTCACATTTCTCTGTTCTTCATTGGTCGGCACTGAGTGGTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtaccttctttttctttgttccatcaatttttatttactctgcttctaagttttatgtattagtattgatgtttcatgtttttcttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58029875|gb|CX725302.1|CX725302
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|5510853|gb|AI857237.1|AI857237
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|60347828|gb|DN214801.1|DN214801
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|8368895|gb|BE051840.1|BE051840
EST:     AAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: AAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|20301188|gb|BQ164131.1|BQ164131
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|453303|gb|T15277.1|T15277
EST:     GTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|67012835|gb|CO441584.1|CO441584
EST:     TGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTAC
genomic: TGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAA-GGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTAC
EST: gi|20301181|gb|BQ164124.1|BQ164124
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|20300911|gb|BQ163854.1|BQ163854
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|20301275|gb|BQ164218.1|BQ164218
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCATGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|20300918|gb|BQ163861.1|BQ163861
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
EST: gi|26456084|gb|CA827667.1|CA827667
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC