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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAAGAAGCTGTCCAGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaacagcgcttttacttctgctctacctttttgctctgtgctccacag

Basic information

species Zea mays
transcript GRMZM2G108919_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108919_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 4
GCAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAAGAAGCTGTCCAGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaaca-gcgcttttacttctgc--tctacc---tttttgctctgtgctccacag
 ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||| ||| |||||||||| ||||| ||||| |||||||      ||||  |    |   |   |   ||  || ||| |   ||   ||   | ||||      ||  | |||    ||| || | ||||||| ||||
ACAGCCAAAAGGTTTTGCTTATGTGGAATTTCTGGAACAAGAAGCAGTTCAGGAGGCTCTGAATTTGAATGAATCTGAACTGCATGGTCGTCAGATAAAGgtgcagaaattaccaacagatccctgttttgtcacctgaaggattcaaaaactccttttcacatgtttttgtcctcgcaatttactcaatttctgttttgtgctcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7135303|gb|AW498018.1|AW498018
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|60351908|gb|DN218881.1|DN218881
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211491424|gb|FL310090.1|FL310090
EST:     AGGAAGCTCTGAACTTGAATGAWTCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGAT
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGAT
EST: gi|211538316|gb|FL356780.1|FL356780
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAG-ACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|9731847|gb|BE510599.1|BE510599
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211517204|gb|FL332921.1|FL332921
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|9731934|gb|BE510686.1|BE510686
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAATTAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|120480223|gb|EH210775.1|EH210775
EST:     AGGAAGTTTTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGATTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|89247954|gb|DY619740.1|DY619740
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|9731848|gb|BE510600.1|BE510600
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|78085156|gb|DV513549.1|DV513549
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|84980134|gb|DW530483.1|DW530483
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211289480|gb|FL348652.1|FL348652
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATSGAAGCAGCGTCCACCACG
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGAT-GAAGCAGCGTCCACCACG
EST: gi|84976804|gb|DW475226.1|DW475226
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|60399133|gb|DN231947.1|DN231947
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|6563947|gb|AW231569.1|AW231569
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|31351934|gb|CD436291.1|CD436291
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCCTGGTCGACAGATTAAG                         GCTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACCC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211110914|gb|FL481563.1|FL481563
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|50329632|gb|CO524758.1|CO524758
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGCCAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211177618|gb|FL479926.1|FL479926
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|31351939|gb|CD436296.1|CD436296
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|60399607|gb|DN232418.1|DN232418
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|31350541|gb|CD434898.1|CD434898
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211279695|gb|FL337096.1|FL337096
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACCTAATGTCCCTGGGATGAAAGCAGCGTCCACCAC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGAC-TAATGTCCCTGGGATGAA-GCAGCGTCCACCAC
EST: gi|60394010|gb|DN226880.1|DN226880
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|211475451|gb|FL342194.1|FL342194
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC