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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGAAAAGGAGCCGCAGGATGGCGCACACGGAGTATGCAATTTTTATGGACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttgtttggcaacaatcttcttccctttatcctctttgtcgcttaattggattactacattaaaacctgacacaagcattccctcaacaacaacaacaacaacaacaaactgacacaagttatggatggcattgcag

Basic information

species Zea mays
transcript GRMZM2G108228_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71318795|gb|DR796159.1|DR796159
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAGG                         GTCAAATTTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTT-CCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
EST: gi|76288559|gb|DV028127.1|DV028127
EST:     CTCGAGGAATTTCTCCCGATCGAGCACTGGCTACCAT-GGGAAGCTAAAG                         G-CAAATTTCCTTGGAACTAAATTTATC
genomic: CTCGAGGAATTTCTCCCGATCGAGCACTGGCTAC-ATTGGGAAGCTAA-Ggtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATC
EST: gi|32942208|gb|CF047027.1|CF047027
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
EST: gi|31359011|gb|CD443368.1|CD443368
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
EST: gi|78111619|gb|DV530016.1|DV530016
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAA
EST: gi|71442832|gb|DR823882.1|DR823882
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAA                         GTCAAATTTCCTTGGAACTAAATTTATCATCTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTA
EST: gi|71766358|gb|DR964295.1|DR964295
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTA
EST: gi|93283817|gb|EB676081.1|EB676081
EST:     ACTCGAGGAATTTCNTCC-GATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGC
genomic: ACTCGAGGAATTTC-TCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGC
EST: gi|50327951|gb|CO523077.1|CO523077
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACG
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACG
EST: gi|32843854|gb|CD983535.1|CD983535
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
EST: gi|32844683|gb|CD984364.1|CD984364
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGT
EST: gi|71312297|gb|DR792672.1|DR792672
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATT-CCTTGAAACTAA-TTTATCATCTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTA
EST: gi|78079710|gb|DV508122.1|DV508122
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAA                         GTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTACGACACACAGGCTCCGTA
EST: gi|91050137|gb|EB160555.1|EB160555
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAA                         GTCAAATTTCCTTGGGACTAAATTTATCATCTA
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCTA
EST: gi|91871229|gb|EB401309.1|EB401309
EST:     GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAG                         GTCAAATTTCCTTGGAACTAAATTTATCATCT
genomic: GACTCGAGGAATTTCTCCCGATCGAGCACTGGCTACATTGGGAAGCTAAGgtgaatcttg ... ggcattgcagGTCAAATTTCCTTGGAACTAAATTTATCATCT