1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGGTGAGGATGACCAGAAGCTTGCTGAAGGAATTAGTCTTCTCGCTGTCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatagattaggttttattatatttgtcccattaaaacctaattattttccagtgaaagctagtgtttttcttctaatttgttggagcatgttagcaatttatttgttcatgcag
species | Zea mays |
transcript | GRMZM2G107984_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|60337954|gb|DN204927.1|DN204927
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|91056824|gb|EB167242.1|EB167242
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|87152778|gb|DY397567.1|DY397567
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|149061229|gb|EE157494.2|EE157494
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: CTCTTCGGAGAACCGTGAAAAACCAGCTGTCCCTTGGG-AATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAA-CAAAAAGGGATEST: gi|32837236|gb|CD976914.1|CD976914
genomic: CTCTTCGGAGAACCGTGAAAAACCAGCTGTCC-TTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|19057890|gb|BM736557.1|BM736557
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAACCAAAAAGGGATEST: gi|78113910|gb|DV532299.1|DV532299
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|32837729|gb|CD977407.1|CD977407
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|149089755|gb|EE179029.2|EE179029
genomic: TGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAEST: gi|32836838|gb|CD976516.1|CD976516
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAA
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|32839302|gb|CD978983.1|CD978983
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|71304548|gb|DR788393.1|DR788393
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|32837093|gb|CD976771.1|CD976771
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGCGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGATEST: gi|19855082|gb|BQ060134.1|BQ060134
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
EST: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAG GAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
genomic: TCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatag ... gttcatgcagGAACATGCCAAAGGTGGTAAGTGCATTGTTTTTACACAAACAAAAAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTGAGGATGACCAGAAGCTTGCTGAAGGAATTAGTCTTCTCGCTGTCTCTTCGGAGAACCGTGAAAAACCAGCTGTCCTTGGGGAATTGATTAAGgtcaatatagattaggttttattatatttgtcccattaaaacctaattattttccagtgaaagctagtgtttttcttctaatttgttggagcatgttagcaatttatttgttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG