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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaatatctttggtgtgtctatgtggatcaaaagtaagtatatgtgctatataccatcttgctaatgctgttcatgcaacccctggctcgtttggcgtgccaactcttgcag

Basic information

species Zea mays
transcript GRMZM2G107807_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107807_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 5'ss of exon 4
TAATAACCTGCCCACTGTTTATGAAGTTGTGACCGGGGTTGCTAAGAAGCAATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaatatctttggtgtgtctatgtggatcaaaagtaagtatatgtgctatataccatcttgctaatgctgttcatgcaacccctggctcgtttggcgtgccaactcttgcag
||||   || |||||||| |||||||||||||| ||  |||| ||||||||| |||||| | ||||||||||||||||||||| ||| || ||| |||||||| ||| || |                  |||||    || | || | |   ||  |  |||| ||      | |  |  ||||   |  |   ||| |  | ||  || || |||
TAATGGTCTTCCCACTGTATATGAAGTTGTGACGGGAATTGCCAAGAAGCAAACAAAAGTCTCCAACGGCAGCAGCAAAAGCAACAAGTCCAACCCTAAAgtatgtacatgt------------------gatca----tatgcatgtctaacatgcattatctagcgccca-tatcaacacaacgtttaacct-tttcgtttcccttcttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342404|gb|DN209377.1|DN209377
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|211259582|gb|FL073576.1|FL073576
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|211262010|gb|FL073578.1|FL073578
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|47962533|gb|CN845242.1|CN845242
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|76285556|gb|DV025124.1|DV025124
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|211029321|gb|FL480588.1|FL480588
EST:     CCCCCTAGAAAAACAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: -CCCC--------CAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|60394653|gb|DN227523.1|DN227523
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|71763520|gb|DR961457.1|DR961457
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|32921335|gb|CF026147.1|CF026147
EST:     AATCAAAAGCCCCCAATGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|76285557|gb|DV025125.1|DV025125
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|211123592|gb|FL454334.1|FL454334
EST:     AATCAAARGCCCCCAACGGCAGCWGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACRGWTCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|5847293|gb|AW000372.1|AW000372
EST:     CCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: CCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|60394161|gb|DN227031.1|DN227031
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|60351249|gb|DN218222.1|DN218222
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|211262011|gb|FL073579.1|FL073579
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|31558778|gb|CD527990.1|CD527990
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|5525573|gb|AI861466.1|AI861466
EST:     AATCAAAAGCCCCCATCGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAANCAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|31558777|gb|CD527989.1|CD527989
EST:     AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAA                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: AATCAAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
EST: gi|45847164|gb|CN071107.1|CN071107
EST:     GCAGCAAAAGCAGCAAATCTAACTCTAAG                         CCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA
genomic: GCAGCAAAAGCAGCAAATCTAACTCTAAAgtaagtaaat ... actcttgcagCCATCAAAACAGATCAATTCTAACAGTAAGCCTGTGAAGCCAGCCCACCCA