Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
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 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaaggttccgaaaatctttttgttctc...

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g08270.4 (Oryza sativa), 5'ss of exon 4
AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaag--gttccgaaaatctttttgttctc
||||||| |||||||  || | ||  |  ||||||||  | ||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||| || |   ||   ||    || ||| |   |  ||||   |    | | || | | | |   | |   |||||   || | |           | |  
AGCTATGAATAAGATTAAAGAAATTGTATGGGAACCATCAATCAGTAAATATGGCTCTGATGATGGTCTTCCTGAACTCCGAGAAGCACTTCTCGAGAAGgtaatttttcaattgggatttgttagata-atggtttccatggcccatgttatcaagccttcccagttatcacaaagcaattaccatgtgagacaaatgca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211470276|gb|FL336876.1|FL336876
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211537775|gb|FL336421.1|FL336421
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGWGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211528508|gb|FL328866.1|FL328866
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148932368|gb|EC876010.2|EC876010
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211529039|gb|FL347042.1|FL347042
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAT-CACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211307789|gb|FL085770.1|FL085770
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211519775|gb|FL337741.1|FL337741
EST:     TTGGTTCTKATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCA
genomic: T-GGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCA
EST: gi|211329406|gb|FL358391.1|FL358391
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211061387|gb|FL333865.1|FL333865
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTG
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTG
EST: gi|211262318|gb|FL317280.1|FL317280
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGC
EST: gi|211237919|gb|FL362192.1|FL362192
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211525076|gb|FL312407.1|FL312407
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCAT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCAT
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211023084|gb|FL313921.1|FL313921
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211213774|gb|FL353738.1|FL353738
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAANAG                         CTAAGCAGAGAGAACAAGCTTACCWAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148931036|gb|EC873618.2|EC873618
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     TGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGG
genomic: TGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCG-AAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGG
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211136252|gb|FL346220.1|FL346220
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTRCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211320586|gb|FL352820.1|FL352820
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTWAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCAC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCAC
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211162581|gb|FL363060.1|FL363060
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211126683|gb|FL312966.1|FL312966
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|19351033|gb|BM895565.1|BM895565
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTKCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211135049|gb|FL315824.1|FL315824
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAA-G                         CTAAGCAGAGAGAACAAGCTT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTT
EST: gi|148963140|gb|EE014107.2|EE014107
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|148950038|gb|EC895570.2|EC895570
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149112179|gb|EE295100.2|EE295100
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211467483|gb|FL327943.1|FL327943
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCMAATCATCAGTCATGGTCACTGC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGC
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211320872|gb|FL365292.1|FL365292
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATCGTCACTGC
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGC
EST: gi|211391856|gb|FL357117.1|FL357117
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211026505|gb|FL356245.1|FL356245
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
EST: gi|211050425|gb|FL364299.1|FL364299
EST:     ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAG                         CTAAGCAGAGAGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT
genomic: ATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttctt ... atttttccagCTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTATGGATAAGATCGAAAAGATCATCAGGGAACCAATAGTCAGTAAATATGGTTCTGATGATGGGCTTCCTGAGCTTCGAGAAGCACTTCTCGAAAAGgtaacttcttttttatcatagaatatatatactttgcccatacactgactaagcagggcatgctcctgagtccaaaggttccgaaaatctttttgttctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC