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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag

Basic information

species Zea mays
transcript GRMZM2G106928_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g44770.2 (Oryza sativa), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcc----tgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||    ||||   || |  | | || || |||| ||  |    |||    |  |  |||  ||     || |||||||| |||| ||||||| || |||| ||||||
GACCACATTTTAACCCAAACAATTTGACGCACGGTGCACCAGAAGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCCAATGCTGAAGgtatagccttcatgtaatcactacgaatgcatttttgatgtttctctctaaaacaatcttcttggcatac----ttattttatggtgtgtctgtttaattg-ttgtcatacag

upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G08650.1 (Glycine max), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
|| ||||||||||||| || ||  |||| || ||||| || || || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||   | | |  |           || ||||    | |  ||  |  |   |  ||||||||  ||  |  |  |||||     |||  | || || ||   | ||||
GAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGgtattacttctttccttt-----ctcatttgt--cttcctctactatgtacttctttctggatcctgg-acctgcttatgtatcattttgtcaattgttta-aacacag

upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G19840.3 (Glycine max), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
|| ||||||||||||| || ||  |||| || ||||| || || || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||   | | |    | | ||  |   | | |  |||  | |             ||||| |   ||  |  |  |||||   |  || | | | | |||   | ||||
GAGCACATTTTAATCCTAATAAATTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGgtatttcttct--ttatcggttatcttcctctactatgtactg----------ctttctgaaaactgg-acctgcttatg-tatccttttgtcatttgtttaaacacag

upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G30260.1 (Glycine max), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattag--caaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
| |||||||| ||||| || || || |  || ||||| || || ||  || | || ||||||||||||||||||||||| ||||| ||||| || ||||| || | |  |  ||  |  |    |||  || ||  |||   | ||  ||     |   ||| |  |||||||| |   |                           
GGCCACATTTCAATCCTAATAAACTCAAACATGGTGCTCCGGAGGATAAAATTCGCCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCGATGgtaatgcttctttc--cctcttctttctttggaatgttttttaaacctaagatccatgccctcattttaccattttttaagtacag-------------------------

upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
|||||||||| || || |||||  |||| ||||| || |||||||| ||   |||||||||||||||||||||||||||   ||| ||||| || ||||     | |  || ||   | |  | ||   |||        ||| ||   | |  | ||| || | |    | | ||   |   |  |    | ||    | |   
GACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGgta-----ttttacatcctccattcaagttcccata--------caatttggctgtcttcgataatcaaaaacctgtttgaactaagtactgtttttgtaacaacag--

upper sequence: GRMZM2G106928_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0061g00750.t01 (Vitis vinifera), 5'ss of exon 4
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag
|| ||||||| ||||||||     |||| || ||||| || ||||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||||     |||  ||  || |       |||  | |||| |  |  |  || |   | ||       | |||||||          ||||| |     |||| || |||
GAGCACATTTCAATCCAAATGGGATGACACATGGTGCTCCTGAAGATGATGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCCAATGCTGAAGgtacaaaatgtttcattcatt-------ttgctaaattctt--gttatcttttctgtatgaggcgctatattttttg---------ttgttca-----ttgtaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76909357|gb|DV163347.1|DV163347
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|32858163|gb|CD997844.1|CD997844
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|149048831|gb|EE048331.2|EE048331
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|14701428|gb|BI233846.1|BI233846
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|110201685|gb|EC883582.1|EC883582
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|111192574|gb|EE290710.1|EE290710
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|78120855|gb|DV539239.1|DV539239
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|74245754|gb|DT653668.1|DT653668
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|9254208|gb|BE344676.1|BE344676
EST:     TGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: TGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|5871774|gb|AW018245.1|AW018245
EST:     CGAAGTCCTTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|71430440|gb|DR811490.1|DR811490
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|5871789|gb|AW018260.1|AW018260
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|14701400|gb|BI233818.1|BI233818
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|110505087|gb|EE017532.1|EE017532
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|71317884|gb|DR795706.1|DR795706
EST:     TGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: TGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|60341036|gb|DN208009.1|DN208009
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|149100116|gb|EE186171.2|EE186171
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|149105223|gb|EE290711.2|EE290711
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|15208763|gb|BI430647.1|BI430647
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211358167|gb|FL056483.1|FL056483
EST:     CGAAGTCCGTCATGCGGGTGACCTGNGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|15082641|gb|BI389325.1|BI389325
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|89247199|gb|DY618985.1|DY618985
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|60355203|gb|DN222176.1|DN222176
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|15199132|gb|BI423675.1|BI423675
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|93014758|gb|EB640278.1|EB640278
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|93282963|gb|EB675227.1|EB675227
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211051930|gb|FL422540.1|FL422540
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAKCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|6056668|gb|AW091073.1|AW091073
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGGTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|71763838|gb|DR961775.1|DR961775
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|78120854|gb|DV539238.1|DV539238
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|76016343|gb|DT943513.1|DT943513
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|60336753|gb|DN203726.1|DN203726
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|78022822|gb|DV491209.1|DV491209
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|60352737|gb|DN219710.1|DN219710
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|91050822|gb|EB161240.1|EB161240
EST:     GGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|76016342|gb|DT943512.1|DT943512
EST:     TCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: TCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|148944556|gb|EC889680.2|EC889680
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211322575|gb|FL457017.1|FL457017
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|76909356|gb|DV163346.1|DV163346
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|31355089|gb|CD439446.1|CD439446
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|5871782|gb|AW018253.1|AW018253
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAGCATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211275807|gb|FL433165.1|FL433165
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|31357015|gb|CD441372.1|CD441372
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|71763886|gb|DR961823.1|DR961823
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|71318465|gb|DR795998.1|DR795998
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|14701399|gb|BI233817.1|BI233817
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211457760|gb|FL454143.1|FL454143
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG
EST: gi|211490441|gb|FL382377.1|FL382377
EST:     CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGG                         GCATAGCCGAGGCAACCATTGTTGATACCCAG
genomic: CGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 32 (upstream exon), 46 (downstream exon)
Score: 179

GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG


Block sizes: 32 (upstream exon), 49 (downstream exon)
Score: 402

GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG


Block sizes: 32 (upstream exon), 49 (downstream exon)
Score: 137

GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG


Block sizes: 32 (upstream exon), 47 (downstream exon)
Score: 243

GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctg ... tgtgatacagGCATAGCCGAGGCAACCATTGTTGATACCCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCACATTTTAATCCAAACAATCTGACGCACGGTGCACCAGAAGACGAAGTCCGTCATGCGGGTGACCTGGGAAACATTGTTGCAAATGCTGAGGgtaaggcctgtagcaaccagtagtacacttgtgatattcattagcaaatttcttcttctggattatgacatttttttatggcgtgtttgtttaactggttgtgatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG